LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-125b-5p


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Gene
miRNA
Score
DIANA Links
LL22NC03-102D1.18
hsa-miR-125b-5p
0.742
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000438185
Biotype: lincRNA
Gene id: ENSG00000223999
Gene Name: LL22NC03-102D1.18
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
144-166
0.013
1
8mer
409-431
0.012
0
6mer
388-399
0.003
Not Conserved
RP11-196O16.1
hsa-miR-125b-5p
0.741
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000609163
Biotype: lincRNA
Gene id: ENSG00000273477
Gene Name: RP11-196O16.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1552-1575
0.028
2
CTD-3185P2.1
hsa-miR-125b-5p
0.740
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000565387
Biotype: antisense
Gene id: ENSG00000261351
Gene Name: CTD-3185P2.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
214-239
0.026
1
6mer
1201-1214
0.002
1
RP11-515O17.3
hsa-miR-125b-5p
0.740
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000576751
Biotype: lincRNA
Gene id: ENSG00000262079
Gene Name: RP11-515O17.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1714-1739
0.018
0
6mer
41-55
0.005
0
6mer
1503-1519
0.004
1
6mer
1187-1209
0.001
0
RP11-266O8.1
hsa-miR-125b-5p
0.740
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000556519
Biotype: lincRNA
Gene id: ENSG00000257060
Gene Name: RP11-266O8.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
339-365
0.020
1
7mer
372-390
0.008
1
AC004988.1
hsa-miR-125b-5p
0.740
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000415237
Biotype: antisense
Gene id: ENSG00000203446
Gene Name: AC004988.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
127-145
0.016
0
7mer
1153-1165
0.012
1
AC021218.2
hsa-miR-125b-5p
0.739
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000377722
Biotype: lincRNA
Gene id: ENSG00000204876
Gene Name: AC021218.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1774-1787
0.022
1
6mer
151-174
0.004
0
6mer
744-769
0.002
1
6mer
961-983
0.001
0
RP11-503C24.6
hsa-miR-125b-5p
0.739
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000445442
Biotype: sense_intronic
Gene id: ENSG00000224417
Gene Name: RP11-503C24.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1035-1047
0.022
1
7mer
757-772
0.005
1
7mer
1708-1725
0.001
Not Conserved
PRKG1-AS1
hsa-miR-125b-5p
0.738
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000426785
Biotype: antisense
Gene id: ENSG00000236671
Gene Name: PRKG1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
Fibroblasts Foreskin Normal/Primary
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
563-582
0.028
4
RP11-268G12.3
hsa-miR-125b-5p
0.738
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000436019
Biotype: lincRNA
Gene id: ENSG00000242021
Gene Name: RP11-268G12.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
511-537
0.020
0
7mer
337-357
0.007
1
AC005597.1
hsa-miR-125b-5p
0.738
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000588092
Biotype: antisense
Gene id: ENSG00000267223
Gene Name: AC005597.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
312-324
0.028
6
RP5-1184F4.7
hsa-miR-125b-5p
0.738
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000620523
Biotype: antisense
Gene id: ENSG00000277301
Gene Name: RP5-1184F4.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1038-1064
0.028
2
TTN-AS1
hsa-miR-125b-5p
0.737
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000582847
Biotype: antisense
Gene id: ENSG00000237298
Gene Name: TTN-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
179-192
0.028
9
RP11-822E23.8
hsa-miR-125b-5p
0.737
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000426261
Biotype: processed_transcript
Gene id: ENSG00000272780
Gene Name: RP11-822E23.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
252-276
0.014
0
7mer
444-463
0.005
0
7mer
2321-2341
0.005
1
6mer
586-609
0.002
Not Conserved
6mer
1499-1526
0.001
0
RP11-54O7.3
hsa-miR-125b-5p
0.737
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000609207
Biotype: retained_intron
Gene id: ENSG00000223764
Gene Name: RP11-54O7.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1310-1334
0.008
1
7mer
3284-3304
0.007
1
7mer
359-382
0.005
1
7mer
3670-3686
0.005
Not Conserved
6mer
3561-3583
0.002
1
6mer
930-948
0.001
1
XLOC_004419
hsa-miR-125b-5p
0.737
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010710
Biotype: transcript isomorph
Gene id: XLOC_004419
Gene Name: XLOC_004419
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
105-115
0.016
1
7mer
1717-1742
0.011
0
RP11-944L7.4
hsa-miR-125b-5p
0.736
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000457331
Biotype: antisense
Gene id: ENSG00000236869
Gene Name: RP11-944L7.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
46-69
0.025
5
6mer
9-31
0.002
1
XLOC_000626
hsa-miR-125b-5p
0.736
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000071
Biotype: transcript isomorph
Gene id: XLOC_000626
Gene Name: XLOC_000626
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1492-1509
0.010
0
8mer
2891-2907
0.007
1
8mer
1572-1594
0.004
3
6mer
71-92
0.003
1
6mer
2758-2774
0.002
1
7mer
2891-2916
0.002
1
NEXN-AS1
hsa-miR-125b-5p
0.736
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000597757
Biotype: antisense
Gene id: ENSG00000235927
Gene Name: NEXN-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
583-601
0.027
1
XLOC_013356
hsa-miR-125b-5p
0.736
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027767
Biotype: transcript isomorph
Gene id: XLOC_013356
Gene Name: XLOC_013356
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
17-37
0.012
0
7mer
612-638
0.007
0
6mer
514-536
0.003
5
8mer+mismatch
773-800
0.002
2
8mer+mismatch
853-871
0.002
2
8mer+mismatch
973-997
0.001
Not Conserved
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