LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-125b-5p


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Gene
miRNA
Score
DIANA Links
AC009411.2
hsa-miR-125b-5p
0.746
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000458359
Biotype: lincRNA
Gene id: ENSG00000235537
Gene Name: AC009411.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
53-75
0.021
1
7mer
82-103
0.008
1
LINC00961
hsa-miR-125b-5p
0.746
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000443779
Biotype: lincRNA
Gene id: ENSG00000235387
Gene Name: LINC00961
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
781-789
0.009
0
6mer
3-29
0.007
6
6mer
58-84
0.005
3
7mer
476-499
0.004
3
6mer
235-256
0.002
0
SPACA6P
hsa-miR-125b-5p
0.746
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000571328
Biotype: retained_intron
Gene id: ENSG00000182310
Gene Name: SPACA6P
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
69-95
0.025
1
6mer
325-347
0.004
1
RP11-627G23.1
hsa-miR-125b-5p
0.745
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000532886
Biotype: retained_intron
Gene id: ENSG00000255545
Gene Name: RP11-627G23.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
76-94
0.010
1
8mer
1460-1486
0.004
1
9mer
2422-2449
0.004
0
6mer
3889-3914
0.003
0
7mer
689-706
0.003
0
6mer
3867-3884
0.002
1
6mer
1918-1934
0.002
3
XLOC_004644
hsa-miR-125b-5p
0.745
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010838
Biotype: transcript isomorph
Gene id: XLOC_004644
Gene Name: XLOC_004644
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
80-99
0.028
0
XLOC_009194
hsa-miR-125b-5p
0.745
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019370
Biotype: transcript isomorph
Gene id: XLOC_009194
Gene Name: XLOC_009194
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Liver Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1981-1994
0.024
0
6mer
98-117
0.003
2
6mer
955-970
0.001
1
RP11-522B15.7
hsa-miR-125b-5p
0.745
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000560586
Biotype: lincRNA
Gene id: ENSG00000259534
Gene Name: RP11-522B15.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
332-355
0.028
1
KDM5C-IT1
hsa-miR-125b-5p
0.744
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000412242
Biotype: sense_intronic
Gene id: ENSG00000235262
Gene Name: KDM5C-IT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
440-462
0.028
2
RP11-573D15.2
hsa-miR-125b-5p
0.744
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000419745
Biotype: lincRNA
Gene id: ENSG00000232233
Gene Name: RP11-573D15.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Testes Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1617-1642
0.017
1
7mer
262-283
0.008
Not Conserved
6mer
156-171
0.003
Not Conserved
XLOC_012784
hsa-miR-125b-5p
0.744
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026436
Biotype: transcript isomorph
Gene id: XLOC_012784
Gene Name: XLOC_012784
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HREpiC Kidney Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1551-1558
0.028
0
CTD-2516F10.2
hsa-miR-125b-5p
0.743
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000504206
Biotype: antisense
Gene id: ENSG00000251364
Gene Name: CTD-2516F10.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
320-345
0.023
2
7mer
2633-2639
0.003
0
6mer
1208-1234
0.002
2
TRHDE-AS1
hsa-miR-125b-5p
0.743
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000435350
Biotype: antisense
Gene id: ENSG00000236333
Gene Name: TRHDE-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1826-1841
0.026
1
6mer
828-851
0.003
0
XLOC_003260
hsa-miR-125b-5p
0.743
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00005831
Biotype: transcript isomorph
Gene id: XLOC_003260
Gene Name: XLOC_003260
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
123-133
0.017
2
7mer
360-365
0.006
0
6mer
512-533
0.003
1
6mer
621-645
0.002
0
LINC00837
hsa-miR-125b-5p
0.742
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000608061
Biotype: lincRNA
Gene id: ENSG00000235824
Gene Name: LINC00837
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
304-323
0.028
0
XLOC_000056
hsa-miR-125b-5p
0.742
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000841
Biotype: transcript isomorph
Gene id: XLOC_000056
Gene Name: XLOC_000056
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
98-118
0.028
0
XLOC_002996
hsa-miR-125b-5p
0.742
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006377
Biotype: transcript isomorph
Gene id: XLOC_002996
Gene Name: XLOC_002996
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
218-240
0.005
0
8mer
2031-2056
0.004
Not Conserved
8mer
2841-2854
0.004
Not Conserved
8mer
1099-1114
0.004
Not Conserved
8mer
2124-2149
0.003
Not Conserved
7mer
2547-2572
0.002
Not Conserved
8mer
2878-2903
0.002
Not Conserved
6mer
1418-1445
0.001
Not Conserved
6mer
3143-3159
0.001
Not Conserved
6mer
4077-4097
0.001
Not Conserved
6mer
4455-4471
0.001
Not Conserved
6mer
3791-3807
0.001
Not Conserved
6mer
5049-5065
0.001
Not Conserved
RP13-1032I1.7
hsa-miR-125b-5p
0.742
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000575312
Biotype: antisense
Gene id: ENSG00000262049
Gene Name: RP13-1032I1.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
470-487
0.021
1
8mer
1183-1197
0.003
0
6mer
132-155
0.002
0
6mer
377-392
0.002
1
RP11-181E10.3
hsa-miR-125b-5p
0.742
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000603748
Biotype: lincRNA
Gene id: ENSG00000271590
Gene Name: RP11-181E10.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1206-1217
0.020
0
6mer
315-336
0.004
0
6mer
840-866
0.004
0
LINC00950
hsa-miR-125b-5p
0.742
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: NR_024006.1
Biotype: lincRNA
Gene id: NR_024006.1 (gene)
Gene Name: LINC00950
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5056-5083
0.020
1
7mer
4698-4705
0.004
0
7mer
3377-3387
0.002
0
6mer
1657-1661
0.002
3
CTA-221G9.7
hsa-miR-125b-5p
0.742
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000454253
Biotype: lincRNA
Gene id: ENSG00000236641
Gene Name: CTA-221G9.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
296-312
0.015
0
7mer
91-101
0.012
2
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