LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-125b-5p


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Gene
miRNA
Score
DIANA Links
RP11-1078H9.6
hsa-miR-125b-5p
0.749
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000567837
Biotype: lincRNA
Gene id: ENSG00000259789
Gene Name: RP11-1078H9.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2255-2282
0.011
1
6mer
383-406
0.004
4
7mer
2134-2149
0.004
0
6mer
2524-2548
0.004
1
7mer
532-555
0.003
Not Conserved
6mer
1189-1214
0.002
3
XLOC_012041
hsa-miR-125b-5p
0.749
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024306
Biotype: transcript isomorph
Gene id: XLOC_012041
Gene Name: XLOC_012041
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4441-4466
0.012
0
8mer
6758-6770
0.009
1
7mer
3002-3017
0.004
1
7mer
1923-1943
0.002
0
6mer
5131-5157
0.001
4
6mer
1562-1586
0.001
Not Conserved
RP11-406H4.1
hsa-miR-125b-5p
0.749
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000547633
Biotype: antisense
Gene id: ENSG00000258039
Gene Name: RP11-406H4.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
79-104
0.029
2
XLOC_003406
hsa-miR-125b-5p
0.749
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006773
Biotype: transcript isomorph
Gene id: XLOC_003406
Gene Name: XLOC_003406
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3047-3064
0.014
1
6mer
4522-4544
0.009
1
7mer
3410-3416
0.003
0
6mer
3901-3921
0.002
0
RP11-1007I13.4
hsa-miR-125b-5p
0.749
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000577437
Biotype: processed_transcript
Gene id: ENSG00000266560
Gene Name: RP11-1007I13.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
330-350
0.024
0
6mer
483-509
0.003
0
6mer
323-344
0.002
1
RP4-671O14.6
hsa-miR-125b-5p
0.748
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624919
Biotype: sense_overlapping
Gene id: ENSG00000280434
Gene Name: RP4-671O14.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4356-4375
0.006
0
8mer
9756-9780
0.005
0
7mer
7759-7783
0.003
2
6mer
771-795
0.002
Not Conserved
7mer
3758-3770
0.002
0
6mer
1056-1076
0.001
1
7mer
9639-9655
0.001
0
6mer
1632-1647
0.001
1
6mer
10064-10069
0.001
0
6mer
1973-1993
0.001
1
7mer
7996-8015
0.001
1
6mer
9069-9093
0.001
0
6mer
8312-8336
0.001
1
6mer
6014-6022
0.001
0
6mer
4213-4233
0.001
0
6mer
9614-9632
0.001
0
6mer
8134-8154
0.001
1
SNHG14
hsa-miR-125b-5p
0.748
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000441592
Biotype: antisense
Gene id: ENSG00000224078
Gene Name: SNHG14
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
81-100
0.028
1
XLOC_013685
hsa-miR-125b-5p
0.748
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028336
Biotype: transcript isomorph
Gene id: XLOC_013685
Gene Name: XLOC_013685
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
879-885
0.025
1
6mer
1648-1668
0.004
1
XLOC_010101
hsa-miR-125b-5p
0.748
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020255
Biotype: transcript isomorph
Gene id: XLOC_010101
Gene Name: XLOC_010101
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
Fibroblasts Foreskin Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3239-3263
0.024
3
6mer
851-855
0.005
5
C16orf47
hsa-miR-125b-5p
0.748
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000358463
Biotype: lincRNA
Gene id: ENSG00000197445
Gene Name: C16orf47
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1191-1205
0.011
10
6mer
1230-1242
0.010
9
7mer
97-110
0.004
0
6mer
885-891
0.002
0
6mer
855-863
0.002
0
RP11-673E1.1
hsa-miR-125b-5p
0.747
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000509873
Biotype: lincRNA
Gene id: ENSG00000251600
Gene Name: RP11-673E1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
311-333
0.028
0
RP11-493E12.3
hsa-miR-125b-5p
0.747
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000462959
Biotype: processed_transcript
Gene id: ENSG00000274769
Gene Name: RP11-493E12.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
173-194
0.028
6
RP11-620J15.2
hsa-miR-125b-5p
0.747
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000499481
Biotype: lincRNA
Gene id: ENSG00000245651
Gene Name: RP11-620J15.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3240-3264
0.024
3
6mer
852-856
0.005
5
LOC100630918
hsa-miR-125b-5p
0.747
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_038942.1
Biotype: lincRNA
Gene id: NR_038942.1 (gene)
Gene Name: LOC100630918
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
458-483
0.024
0
6mer
649-669
0.004
1
6mer
1226-1250
0.001
0
RP1-116K23.1
hsa-miR-125b-5p
0.747
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000542804
Biotype: lincRNA
Gene id: ENSG00000256763
Gene Name: RP1-116K23.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
439-461
0.028
0
RP11-162D9.3
hsa-miR-125b-5p
0.747
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000529837
Biotype: antisense
Gene id: ENSG00000254687
Gene Name: RP11-162D9.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
365-388
0.015
0
7mer
441-447
0.009
1
6mer
101-124
0.004
0
LINC00961
hsa-miR-125b-5p
0.747
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: NR_024283.1
Biotype: lincRNA
Gene id: NR_024283.1 (gene)
Gene Name: LINC00961
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
781-789
0.009
0
6mer
3-29
0.007
6
6mer
58-84
0.005
3
7mer
476-499
0.004
3
6mer
235-256
0.002
0
RP11-462P6.1
hsa-miR-125b-5p
0.747
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000558245
Biotype: lincRNA
Gene id: ENSG00000259447
Gene Name: RP11-462P6.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
309-329
0.028
5
LINC00461
hsa-miR-125b-5p
0.746
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000504246
Biotype: lincRNA
Gene id: ENSG00000245526
Gene Name: LINC00461
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
249-265
0.023
1
6mer
1986-2002
0.003
7
6mer
1330-1357
0.002
2
TRPM2-AS
hsa-miR-125b-5p
0.746
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000456880
Biotype: antisense
Gene id: ENSG00000230061
Gene Name: TRPM2-AS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1759-1784
0.024
1
6mer
1366-1389
0.004
1
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