LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-125b-5p


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Gene
miRNA
Score
DIANA Links
DLX6-AS1
hsa-miR-125b-5p
0.755
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000430404
Biotype: antisense
Gene id: ENSG00000231764
Gene Name: DLX6-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
255-275
0.022
1
6mer
154-173
0.004
1
6mer
118-140
0.003
0
XLOC_012885
hsa-miR-125b-5p
0.755
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026566
Biotype: transcript isomorph
Gene id: XLOC_012885
Gene Name: XLOC_012885
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3737-3751
0.010
1
7mer
5021-5046
0.008
1
8mer
2714-2731
0.003
2
8mer
2134-2150
0.003
0
6mer
5003-5027
0.002
1
6mer
4164-4185
0.001
0
6mer
4292-4313
0.001
0
6mer
2739-2761
0.001
Not Conserved
RP11-274B18.4
hsa-miR-125b-5p
0.755
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000413269
Biotype: lincRNA
Gene id: ENSG00000226337
Gene Name: RP11-274B18.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1415-1437
0.029
0
XLOC_002079
hsa-miR-125b-5p
0.755
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00005139
Biotype: transcript isomorph
Gene id: XLOC_002079
Gene Name: XLOC_002079
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
598-613
0.013
0
7mer
991-1006
0.008
0
7mer
843-858
0.005
Not Conserved
7mer
746-760
0.003
Not Conserved
XLOC_008776
hsa-miR-125b-5p
0.755
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00017733
Biotype: transcript isomorph
Gene id: XLOC_008776
Gene Name: XLOC_008776
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
336-354
0.009
1
6mer
2949-2975
0.007
6
6mer
2831-2849
0.003
1
6mer
676-694
0.003
1
6mer
455-482
0.003
0
6mer
2636-2655
0.002
0
6mer
1751-1772
0.001
0
RP11-34P13.13
hsa-miR-125b-5p
0.754
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000484859
Biotype: antisense
Gene id: ENSG00000241860
Gene Name: RP11-34P13.13
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1196-1221
0.029
1
XLOC_007688
hsa-miR-125b-5p
0.754
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015809
Biotype: transcript isomorph
Gene id: XLOC_007688
Gene Name: XLOC_007688
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
701-708
0.029
0
RP11-420A23.1
hsa-miR-125b-5p
0.754
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000511497
Biotype: lincRNA
Gene id: ENSG00000251432
Gene Name: RP11-420A23.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1830-1848
0.029
0
XLOC_006356
hsa-miR-125b-5p
0.753
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013698
Biotype: transcript isomorph
Gene id: XLOC_006356
Gene Name: XLOC_006356
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
104-119
0.029
2
XLOC_006391
hsa-miR-125b-5p
0.753
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013752
Biotype: transcript isomorph
Gene id: XLOC_006391
Gene Name: XLOC_006391
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
55-81
0.029
0
RP11-586K2.1
hsa-miR-125b-5p
0.753
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000520849
Biotype: antisense
Gene id: ENSG00000253553
Gene Name: RP11-586K2.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
377-394
0.029
1
LINC01426
hsa-miR-125b-5p
0.753
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000420877
Biotype: antisense
Gene id: ENSG00000234380
Gene Name: LINC01426
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2279-2298
0.013
1
8mer
389-413
0.011
1
6mer
184-207
0.003
0
6mer
1503-1525
0.002
1
RP11-822E23.2
hsa-miR-125b-5p
0.752
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000579239
Biotype: antisense
Gene id: ENSG00000266466
Gene Name: RP11-822E23.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
876-895
0.029
1
XLOC_007358
hsa-miR-125b-5p
0.752
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015672
Biotype: transcript isomorph
Gene id: XLOC_007358
Gene Name: XLOC_007358
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
420-427
0.029
0
RP11-284F21.9
hsa-miR-125b-5p
0.752
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000606343
Biotype: lincRNA
Gene id: ENSG00000272068
Gene Name: RP11-284F21.9
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2174-2192
0.013
1
8mer
1593-1611
0.010
1
6mer
446-470
0.002
0
6mer
2744-2765
0.002
0
6mer
1076-1100
0.002
0
RP11-875O11.3
hsa-miR-125b-5p
0.752
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000523806
Biotype: antisense
Gene id: ENSG00000253616
Gene Name: RP11-875O11.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
315-326
0.029
1
CTD-2034I4.1
hsa-miR-125b-5p
0.751
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000559211
Biotype: lincRNA
Gene id: ENSG00000259543
Gene Name: CTD-2034I4.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
218-234
0.029
2
TEX26-AS1
hsa-miR-125b-5p
0.751
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000588425
Biotype: antisense
Gene id: ENSG00000224743
Gene Name: TEX26-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
441-462
0.029
1
RP11-893F2.15
hsa-miR-125b-5p
0.750
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000577175
Biotype: lincRNA
Gene id: ENSG00000263176
Gene Name: RP11-893F2.15
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
346-363
0.029
1
LINC00565
hsa-miR-125b-5p
0.749
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000562710
Biotype: lincRNA
Gene id: ENSG00000260910
Gene Name: LINC00565
UCSC graphic:
Expression:
  Cell Line Tissue Category
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1450-1472
0.027
1
6mer
641-668
0.002
1
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