LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-125b-5p


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Gene
miRNA
Score
DIANA Links
XXbac-BPG254F23.7
hsa-miR-125b-5p
0.760
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000458375
Biotype: lincRNA
Gene id: ENSG00000232080
Gene Name: XXbac-BPG254F23.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
89-106
0.030
0
RP11-46C24.3
hsa-miR-125b-5p
0.760
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000378340
Biotype: lincRNA
Gene id: ENSG00000205015
Gene Name: RP11-46C24.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
249-264
0.011
0
8mer
894-917
0.008
0
7mer
270-289
0.007
2
6mer
273-299
0.003
1
7mer
598-616
0.001
Not Conserved
RP11-474D1.3
hsa-miR-125b-5p
0.760
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: NR_024457.2
Biotype: lincRNA
Gene id: NR_024457.2 (gene)
Gene Name: RP11-474D1.3
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2329-2352
0.011
1
7mer
1844-1870
0.006
0
6mer
156-181
0.005
1
6mer
987-1013
0.003
Not Conserved
6mer
769-773
0.003
1
6mer
1210-1223
0.001
1
6mer
2225-2246
0.001
0
LINC01010
hsa-miR-125b-5p
0.760
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000440090
Biotype: lincRNA
Gene id: ENSG00000236700
Gene Name: LINC01010
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1245-1270
0.015
5
6mer
64-82
0.006
1
6mer
1194-1215
0.005
4
6mer
689-707
0.003
3
LINC00838
hsa-miR-125b-5p
0.760
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000562956
Biotype: lincRNA
Gene id: ENSG00000261683
Gene Name: LINC00838
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
337-355
0.009
1
6mer
2870-2896
0.008
6
6mer
2752-2770
0.003
1
6mer
677-695
0.003
1
6mer
456-483
0.003
0
6mer
2557-2576
0.002
0
6mer
1741-1762
0.001
0
AC004744.3
hsa-miR-125b-5p
0.759
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000447057
Biotype: antisense
Gene id: ENSG00000226522
Gene Name: AC004744.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
216-240
0.026
0
6mer
188-202
0.004
1
FLJ45079
hsa-miR-125b-5p
0.759
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000374983
Biotype: lincRNA
Gene id: ENSG00000204283
Gene Name: FLJ45079
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2386-2408
0.014
1
7mer
169-192
0.006
1
8mer
2177-2203
0.003
1
6mer
4266-4290
0.002
2
6mer
3688-3709
0.002
0
6mer
2784-2809
0.001
3
APOC4-APOC2
hsa-miR-125b-5p
0.759
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: NR_037932.1
Biotype: sense
Gene id: NR_037932.1 (gene)
Gene Name: APOC4-APOC2
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1402-1424
0.029
1
bP-21264C1.2
hsa-miR-125b-5p
0.759
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000622995
Biotype: lincRNA
Gene id: ENSG00000278932
Gene Name: bP-21264C1.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
91-116
0.029
0
RP11-363G10.2
hsa-miR-125b-5p
0.759
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000375625
Biotype: lincRNA
Gene id: ENSG00000179028
Gene Name: RP11-363G10.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
386-404
0.027
2
6mer
1359-1383
0.002
1
SLC14A2-AS1
hsa-miR-125b-5p
0.759
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000592899
Biotype: antisense
Gene id: ENSG00000267097
Gene Name: SLC14A2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
54-77
0.029
2
AP000289.6
hsa-miR-125b-5p
0.758
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: NR_109961.1
Biotype: lincRNA
Gene id: NR_109961.1 (gene)
Gene Name: AP000289.6
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
330-336
0.025
1
6mer
635-639
0.004
2
CTB-58E17.9
hsa-miR-125b-5p
0.757
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000620144
Biotype: antisense
Gene id: ENSG00000275665
Gene Name: CTB-58E17.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
365-379
0.025
4
6mer
26-50
0.004
1
RP11-244F12.3
hsa-miR-125b-5p
0.757
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000561241
Biotype: antisense
Gene id: ENSG00000259498
Gene Name: RP11-244F12.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1357-1364
0.018
3
7mer
545-559
0.009
1
6mer
813-834
0.002
2
RP11-509A17.3
hsa-miR-125b-5p
0.756
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000557528
Biotype: lincRNA
Gene id: ENSG00000258654
Gene Name: RP11-509A17.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
238-259
0.023
0
6mer
326-352
0.007
1
XLOC_009124
hsa-miR-125b-5p
0.756
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019298
Biotype: transcript isomorph
Gene id: XLOC_009124
Gene Name: XLOC_009124
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1335-1349
0.021
2
6mer
2323-2334
0.004
2
6mer
1863-1885
0.004
0
AP000289.6
hsa-miR-125b-5p
0.755
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000421051
Biotype: lincRNA
Gene id: ENSG00000226527
Gene Name: AP000289.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
335-341
0.025
1
6mer
640-644
0.004
2
RP11-508N12.2
hsa-miR-125b-5p
0.755
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000439901
Biotype: antisense
Gene id: ENSG00000230782
Gene Name: RP11-508N12.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1435-1452
0.017
3
8mer
994-1014
0.008
2
7mer
560-579
0.004
0
RP11-815J21.3
hsa-miR-125b-5p
0.755
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000560712
Biotype: antisense
Gene id: ENSG00000259276
Gene Name: RP11-815J21.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
349-373
0.029
3
FOXP1-IT1
hsa-miR-125b-5p
0.755
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000498714
Biotype: sense_intronic
Gene id: ENSG00000242094
Gene Name: FOXP1-IT1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
3508-3533
0.012
5
7mer
216-230
0.007
1
7mer
2006-2011
0.007
0
6mer
1315-1320
0.003
5
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