LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-125b-5p


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Gene
miRNA
Score
DIANA Links
RP5-944M2.3
hsa-miR-125b-5p
0.766
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000397346
Biotype: lincRNA
Gene id: ENSG00000214043
Gene Name: RP5-944M2.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1856-1872
0.028
1
7mer
917-937
0.002
Not Conserved
XLOC_002258
hsa-miR-125b-5p
0.766
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004374
Biotype: transcript isomorph
Gene id: XLOC_002258
Gene Name: XLOC_002258
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
806-822
0.030
1
BIN3-IT1
hsa-miR-125b-5p
0.766
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: NR_027715.1
Biotype: sense
Gene id: NR_027715.1 (gene)
Gene Name: BIN3-IT1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1778-1794
0.023
6
6mer
389-416
0.004
4
6mer
986-1004
0.002
1
AP000997.2
hsa-miR-125b-5p
0.765
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000564619
Biotype: lincRNA
Gene id: ENSG00000260254
Gene Name: AP000997.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
8029-8048
0.010
0
7mer
830-845
0.009
1
6mer
3361-3387
0.002
5
6mer
7315-7334
0.002
1
6mer
3531-3535
0.002
5
7mer
6419-6440
0.002
0
6mer
2496-2516
0.002
0
6mer
6073-6085
0.001
0
AC003090.1
hsa-miR-125b-5p
0.765
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000423689
Biotype: lincRNA
Gene id: ENSG00000223561
Gene Name: AC003090.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
482-504
0.030
4
BCDIN3D-AS1
hsa-miR-125b-5p
0.765
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000548872
Biotype: antisense
Gene id: ENSG00000258057
Gene Name: BCDIN3D-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
343-366
0.019
5
7mer
2300-2316
0.011
0
XLOC_003044
hsa-miR-125b-5p
0.764
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006440
Biotype: transcript isomorph
Gene id: XLOC_003044
Gene Name: XLOC_003044
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
174-180
0.030
1
WEE2-AS1
hsa-miR-125b-5p
0.764
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000465110
Biotype: antisense
Gene id: ENSG00000228775
Gene Name: WEE2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1053-1078
0.027
3
6mer
447-470
0.003
1
AP000330.8
hsa-miR-125b-5p
0.764
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: NR_038885.1
Biotype: lincRNA
Gene id: NR_038885.1 (gene)
Gene Name: AP000330.8
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2211-2230
0.013
1
8mer
321-345
0.011
1
6mer
116-139
0.003
0
6mer
1435-1457
0.002
1
RP11-532M24.1
hsa-miR-125b-5p
0.764
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000606244
Biotype: antisense
Gene id: ENSG00000272486
Gene Name: RP11-532M24.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
156-171
0.030
1
EMC3-AS1
hsa-miR-125b-5p
0.764
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: NR_103821.1
Biotype: antisense
Gene id: NR_103821.1 (gene)
Gene Name: EMC3-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
4360-4383
0.017
0
8mer
3207-3213
0.005
Not Conserved
6mer
89-115
0.002
Not Conserved
6mer
3675-3695
0.002
Not Conserved
6mer
1172-1194
0.001
0
6mer
3113-3133
0.001
Not Conserved
6mer
1914-1929
0.001
0
6mer
2635-2659
0.001
Not Conserved
6mer
2453-2476
0.001
Not Conserved
CTD-2353F22.1
hsa-miR-125b-5p
0.764
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000512329
Biotype: antisense
Gene id: ENSG00000250155
Gene Name: CTD-2353F22.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
62-80
0.027
2
6mer
28-48
0.003
1
RP11-597K23.2
hsa-miR-125b-5p
0.763
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000559788
Biotype: lincRNA
Gene id: ENSG00000259518
Gene Name: RP11-597K23.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
289-315
0.030
1
PWRN1
hsa-miR-125b-5p
0.763
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000568609
Biotype: lincRNA
Gene id: ENSG00000259905
Gene Name: PWRN1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
299-324
0.021
1
6mer
9-29
0.004
0
6mer
967-988
0.004
0
RP11-153K16.1
hsa-miR-125b-5p
0.763
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000545400
Biotype: lincRNA
Gene id: ENSG00000256321
Gene Name: RP11-153K16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
422-434
0.028
Not Conserved
6mer
863-882
0.002
1
XLOC_000291
hsa-miR-125b-5p
0.762
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001024
Biotype: transcript isomorph
Gene id: XLOC_000291
Gene Name: XLOC_000291
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
685-700
0.030
0
DNAJC3-AS1
hsa-miR-125b-5p
0.762
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000499499
Biotype: lincRNA
Gene id: ENSG00000247400
Gene Name: DNAJC3-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2515-2538
0.019
3
8mer
1644-1656
0.008
0
8mer+mismatch
2667-2689
0.003
Not Conserved
RP11-533E19.7
hsa-miR-125b-5p
0.761
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000610272
Biotype: lincRNA
Gene id: ENSG00000272906
Gene Name: RP11-533E19.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
782-808
0.030
9
XLOC_001220
hsa-miR-125b-5p
0.761
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001834
Biotype: transcript isomorph
Gene id: XLOC_001220
Gene Name: XLOC_001220
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1609-1624
0.013
1
9mer
1495-1513
0.008
Not Conserved
6mer
1659-1675
0.005
1
6mer
212-235
0.003
0
PWAR1
hsa-miR-125b-5p
0.760
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: NR_022009.1
Biotype: lincRNA
Gene id: NR_022009.1 (gene)
Gene Name: PWAR1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2342-2366
0.019
0
6mer
1873-1893
0.005
2
6mer
701-717
0.003
2
6mer
537-564
0.003
1
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