LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-125b-5p


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Gene
miRNA
Score
DIANA Links
LOC284933
hsa-miR-125b-5p
0.771
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: NR_038917.1
Biotype: antisense
Gene id: NR_038917.1 (gene)
Gene Name: LOC284933
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1329-1335
0.023
1
7mer
733-758
0.006
1
6mer
566-585
0.002
0
RP11-483E7.1
hsa-miR-125b-5p
0.771
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: NR_110187.1
Biotype: lincRNA
Gene id: NR_110187.1 (gene)
Gene Name: RP11-483E7.1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
136-144
0.031
1
RP3-395M20.8
hsa-miR-125b-5p
0.770
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000416860
Biotype: antisense
Gene id: ENSG00000238164
Gene Name: RP3-395M20.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3034-3044
0.014
1
8mer
401-428
0.012
0
6mer
1331-1353
0.001
1
6mer
1119-1137
0.001
0
7mer
1106-1132
0.001
0
6mer
1697-1719
0.001
1
XLOC_011176
hsa-miR-125b-5p
0.770
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023866
Biotype: transcript isomorph
Gene id: XLOC_011176
Gene Name: XLOC_011176
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
170-176
0.024
1
7mer
1121-1131
0.007
Not Conserved
RBFADN
hsa-miR-125b-5p
0.770
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000568911
Biotype: lincRNA
Gene id: ENSG00000261126
Gene Name: RBFADN
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1195-1206
0.010
0
7mer
1760-1783
0.007
1
9mer
1879-1902
0.005
1
7mer
1860-1884
0.002
1
6mer
4144-4155
0.002
1
6mer
3939-3963
0.001
1
6mer
3099-3121
0.001
0
6mer
3541-3562
0.001
0
6mer
3424-3448
0.001
0
6mer
3228-3251
0.000
0
CTA-243E7.1
hsa-miR-125b-5p
0.769
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623980
Biotype: antisense
Gene id: ENSG00000279110
Gene Name: CTA-243E7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
75-97
0.005
1
7mer
1409-1434
0.005
Not Conserved
7mer
6827-6843
0.004
1
8mer+wobble
12752-12777
0.004
0
7mer
7801-7824
0.004
1
6mer
12576-12594
0.002
1
6mer
12523-12535
0.002
2
6mer
2762-2783
0.001
1
6mer
2508-2512
0.001
0
6mer
9621-9640
0.001
1
6mer
6660-6670
0.001
1
6mer
2480-2501
0.000
1
KB-1552D7.2
hsa-miR-125b-5p
0.769
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000622091
Biotype: sense_intronic
Gene id: ENSG00000179577
Gene Name: KB-1552D7.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1166-1186
0.030
0
CTA-246H3.12
hsa-miR-125b-5p
0.769
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000609330
Biotype: lincRNA
Gene id: ENSG00000272942
Gene Name: CTA-246H3.12
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
239-263
0.030
0
RP5-1142A6.8
hsa-miR-125b-5p
0.769
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000333666
Biotype: antisense
Gene id: ENSG00000182376
Gene Name: RP5-1142A6.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
698-720
0.013
1
8mer
1440-1455
0.007
1
6mer
378-402
0.003
2
6mer
1308-1335
0.003
0
6mer
1659-1685
0.002
1
6mer
1518-1543
0.002
2
6mer
999-1024
0.001
Not Conserved
AC005614.5
hsa-miR-125b-5p
0.769
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000595508
Biotype: processed_transcript
Gene id: ENSG00000269749
Gene Name: AC005614.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
299-312
0.014
1
7mer
22-35
0.013
1
6mer
230-249
0.003
1
NOP14-AS1
hsa-miR-125b-5p
0.768
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000512712
Biotype: antisense
Gene id: ENSG00000249673
Gene Name: NOP14-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2648-2671
0.012
1
8mer
782-793
0.008
1
7mer
3016-3036
0.003
0
6mer
2787-2807
0.002
1
6mer
2199-2216
0.002
0
6mer
1854-1871
0.002
1
6mer
879-904
0.001
1
6mer
2210-2235
0.001
0
6mer
2203-2222
0.001
0
6mer
1874-1895
0.000
0
RP11-430C7.5
hsa-miR-125b-5p
0.767
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000444037
Biotype: lincRNA
Gene id: ENSG00000240219
Gene Name: RP11-430C7.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2058-2084
0.025
0
6mer
1710-1723
0.003
1
6mer
1101-1119
0.002
1
FAM85B
hsa-miR-125b-5p
0.767
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000519726
Biotype: antisense
Gene id: ENSG00000253893
Gene Name: FAM85B
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
53-67
0.026
0
6mer
691-709
0.004
1
ALG9-IT1
hsa-miR-125b-5p
0.767
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000531305
Biotype: sense_intronic
Gene id: ENSG00000254450
Gene Name: ALG9-IT1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
468-486
0.030
1
RP11-206L10.3
hsa-miR-125b-5p
0.767
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000416385
Biotype: lincRNA
Gene id: ENSG00000235373
Gene Name: RP11-206L10.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1196-1211
0.030
0
KB-1552D7.2
hsa-miR-125b-5p
0.767
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000319051
Biotype: pseudogene
Gene id: ENSG00000179577
Gene Name: KB-1552D7.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1166-1186
0.030
0
RP11-356C4.3
hsa-miR-125b-5p
0.767
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000562203
Biotype: lincRNA
Gene id: ENSG00000260507
Gene Name: RP11-356C4.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
140-160
0.030
0
SLC14A2-AS1
hsa-miR-125b-5p
0.767
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000592286
Biotype: antisense
Gene id: ENSG00000267097
Gene Name: SLC14A2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
42-65
0.030
2
BCDIN3D-AS1
hsa-miR-125b-5p
0.767
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: NR_027499.1
Biotype: antisense
Gene id: NR_027499.1 (gene)
Gene Name: BCDIN3D-AS1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
342-365
0.019
5
7mer
2299-2315
0.011
0
RP11-227F19.2
hsa-miR-125b-5p
0.766
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000510602
Biotype: lincRNA
Gene id: ENSG00000249122
Gene Name: RP11-227F19.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
130-154
0.030
1
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