LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-125b-5p


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Gene
miRNA
Score
DIANA Links
LINC01520
hsa-miR-125b-5p
0.775
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000441457
Biotype: lincRNA
Gene id: ENSG00000230962
Gene Name: LINC01520
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
24-51
0.027
1
6mer
340-361
0.004
2
NCAM1-AS1
hsa-miR-125b-5p
0.775
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000526229
Biotype: antisense
Gene id: ENSG00000227487
Gene Name: NCAM1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
46-60
0.022
1
7mer
869-895
0.009
5
RP11-247C2.2
hsa-miR-125b-5p
0.775
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000514871
Biotype: lincRNA
Gene id: ENSG00000248540
Gene Name: RP11-247C2.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
448-468
0.016
2
7mer
2351-2369
0.008
1
6mer
961-985
0.002
1
6mer
2135-2153
0.002
1
6mer
2077-2100
0.001
2
XLOC_011102
hsa-miR-125b-5p
0.774
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022831
Biotype: transcript isomorph
Gene id: XLOC_011102
Gene Name: XLOC_011102
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2655-2671
0.012
0
6mer
2509-2529
0.006
4
6mer
52-69
0.005
0
6mer
2542-2561
0.004
1
6mer
2088-2100
0.003
4
6mer
1570-1595
0.002
1
AC124997.1
hsa-miR-125b-5p
0.774
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000422117
Biotype: lincRNA
Gene id: ENSG00000235731
Gene Name: AC124997.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Heart Normal/Primary
- Liver Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
709-723
0.029
1
6mer
1334-1348
0.002
2
RP11-406A20.4
hsa-miR-125b-5p
0.774
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000426593
Biotype: lincRNA
Gene id: ENSG00000227555
Gene Name: RP11-406A20.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
61-85
0.029
1
6mer
1576-1583
0.002
1
SNHG14
hsa-miR-125b-5p
0.774
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000551631
Biotype: antisense
Gene id: ENSG00000224078
Gene Name: SNHG14
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
63-88
0.031
1
RP11-1101K5.1
hsa-miR-125b-5p
0.774
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000521753
Biotype: lincRNA
Gene id: ENSG00000253434
Gene Name: RP11-1101K5.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
642-652
0.028
2
6mer
277-296
0.002
1
RP11-153K16.1
hsa-miR-125b-5p
0.774
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000541288
Biotype: lincRNA
Gene id: ENSG00000256321
Gene Name: RP11-153K16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
317-329
0.031
Not Conserved
C1orf213
hsa-miR-125b-5p
0.773
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000335648
Biotype: antisense
Gene id: ENSG00000249087
Gene Name: C1orf213
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1620-1644
0.017
2
7mer
2126-2147
0.014
4
CTA-125H2.2
hsa-miR-125b-5p
0.773
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000609809
Biotype: antisense
Gene id: ENSG00000231933
Gene Name: CTA-125H2.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
351-376
0.020
1
7mer
732-755
0.011
1
RP11-31F15.2
hsa-miR-125b-5p
0.773
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_103777.1
Biotype: lincRNA
Gene id: NR_103777.1 (gene)
Gene Name: RP11-31F15.2
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1493-1511
0.016
1
7mer
2405-2431
0.015
1
RP11-266K4.14
hsa-miR-125b-5p
0.773
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000618256
Biotype: lincRNA
Gene id: ENSG00000275367
Gene Name: RP11-266K4.14
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
108-120
0.012
1
6mer
413-426
0.011
1
6mer
1957-1973
0.005
1
6mer
2732-2758
0.003
0
AC096670.3
hsa-miR-125b-5p
0.773
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000376593
Biotype: antisense
Gene id: ENSG00000204581
Gene Name: AC096670.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2470-2476
0.016
2
7mer
791-807
0.006
1
7mer
1685-1708
0.006
3
6mer
2329-2346
0.002
0
FAM66E
hsa-miR-125b-5p
0.772
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000529252
Biotype: lincRNA
Gene id: ENSG00000225725
Gene Name: FAM66E
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
58-73
0.013
0
6mer
1370-1383
0.008
1
6mer
1065-1077
0.007
1
7mer
193-204
0.003
Not Conserved
XLOC_010979
hsa-miR-125b-5p
0.772
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022688
Biotype: transcript isomorph
Gene id: XLOC_010979
Gene Name: XLOC_010979
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
790-814
0.023
0
6mer
87-91
0.008
3
XLOC_004946
hsa-miR-125b-5p
0.772
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009744
Biotype: transcript isomorph
Gene id: XLOC_004946
Gene Name: XLOC_004946
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
282-299
0.031
1
RP11-613D13.8
hsa-miR-125b-5p
0.772
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000501541
Biotype: lincRNA
Gene id: ENSG00000244953
Gene Name: RP11-613D13.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1582-1600
0.013
0
9mer
1365-1391
0.009
Not Conserved
7mer
620-642
0.003
0
6mer
315-335
0.002
1
6mer
937-961
0.002
1
6mer
1099-1120
0.001
0
BCDIN3D-AS1
hsa-miR-125b-5p
0.771
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: NR_027501.1
Biotype: antisense
Gene id: NR_027501.1 (gene)
Gene Name: BCDIN3D-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
338-361
0.019
5
7mer
2295-2311
0.011
0
RP11-31F15.2
hsa-miR-125b-5p
0.771
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000421157
Biotype: lincRNA
Gene id: ENSG00000238198
Gene Name: RP11-31F15.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1493-1511
0.016
1
7mer
2405-2431
0.015
1
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