LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-125b-5p


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Gene
miRNA
Score
DIANA Links
RP11-114H20.1
hsa-miR-125b-5p
0.786
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000375644
Biotype: lincRNA
Gene id: ENSG00000182776
Gene Name: RP11-114H20.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1966-1984
0.030
3
6mer
987-1011
0.002
1
LINC01118
hsa-miR-125b-5p
0.786
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000409912
Biotype: lincRNA
Gene id: ENSG00000222005
Gene Name: LINC01118
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Skeletal Muscle Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
399-418
0.032
0
RP11-335L23.4
hsa-miR-125b-5p
0.786
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000609144
Biotype: lincRNA
Gene id: ENSG00000273180
Gene Name: RP11-335L23.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
97-122
0.032
2
GATA2-AS1
hsa-miR-125b-5p
0.785
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000473958
Biotype: antisense
Gene id: ENSG00000244300
Gene Name: GATA2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
649-674
0.026
1
6mer
497-521
0.004
1
6mer
47-71
0.002
Not Conserved
XLOC_009337
hsa-miR-125b-5p
0.785
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019542
Biotype: transcript isomorph
Gene id: XLOC_009337
Gene Name: XLOC_009337
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
179-185
0.028
4
6mer
309-335
0.004
1
TTN-AS1
hsa-miR-125b-5p
0.785
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000431259
Biotype: antisense
Gene id: ENSG00000237298
Gene Name: TTN-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
679-703
0.032
4
AC087491.2
hsa-miR-125b-5p
0.785
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000398554
Biotype: lincRNA
Gene id: ENSG00000214546
Gene Name: AC087491.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
118-141
0.032
8
CTD-3049M7.1
hsa-miR-125b-5p
0.785
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000557481
Biotype: lincRNA
Gene id: ENSG00000258754
Gene Name: CTD-3049M7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2185-2204
0.017
0
7mer
2990-3011
0.006
1
6mer
2797-2815
0.003
2
6mer
581-604
0.002
2
6mer
1143-1161
0.002
1
6mer
2040-2065
0.001
0
MIAT
hsa-miR-125b-5p
0.785
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000620145
Biotype: lincRNA
Gene id: ENSG00000225783
Gene Name: MIAT
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4306-4312
0.010
1
8mer+wobble
4762-4784
0.006
0
6mer
9280-9305
0.002
0
6mer
7276-7303
0.002
1
7mer
6735-6754
0.002
0
6mer
6081-6104
0.002
4
6mer
1305-1332
0.001
3
6mer
3297-3303
0.001
1
6mer
8547-8572
0.001
0
6mer
1444-1465
0.001
2
6mer
3532-3548
0.001
3
6mer
8264-8286
0.001
0
6mer
7910-7927
0.001
0
6mer
3400-3420
0.000
0
RP5-875O13.1
hsa-miR-125b-5p
0.784
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000614408
Biotype: pseudogene
Gene id: ENSG00000233421
Gene Name: RP5-875O13.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
59-82
0.025
0
6mer
134-159
0.006
1
RP11-1112C15.1
hsa-miR-125b-5p
0.784
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000522992
Biotype: lincRNA
Gene id: ENSG00000205293
Gene Name: RP11-1112C15.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2023-2043
0.032
0
RP11-709D24.6
hsa-miR-125b-5p
0.784
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000569678
Biotype: antisense
Gene id: ENSG00000261442
Gene Name: RP11-709D24.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
551-557
0.009
0
7mer
757-771
0.007
1
7mer
1510-1531
0.005
1
6mer
31-53
0.003
0
6mer
1359-1385
0.003
1
6mer
1020-1039
0.003
0
6mer
720-736
0.002
1
RP4-734G22.3
hsa-miR-125b-5p
0.784
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000606802
Biotype: antisense
Gene id: ENSG00000272078
Gene Name: RP4-734G22.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
7437-7457
0.005
5
6mer
7371-7398
0.004
7
6mer
122-126
0.003
2
7mer
4867-4887
0.003
6
6mer
7126-7148
0.002
5
7mer
3696-3718
0.002
1
6mer
5114-5138
0.002
8
7mer
3226-3249
0.002
1
6mer
7186-7212
0.002
5
7mer
2421-2438
0.001
1
6mer
6098-6123
0.001
1
6mer
6605-6630
0.001
0
7mer
3286-3309
0.001
2
6mer
820-835
0.001
1
6mer
5786-5802
0.001
2
6mer
6679-6691
0.001
1
6mer
6644-6665
0.001
2
6mer
6694-6716
0.000
2
6mer
5183-5208
0.000
3
MIAT
hsa-miR-125b-5p
0.783
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000616469
Biotype: lincRNA
Gene id: ENSG00000225783
Gene Name: MIAT
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4306-4312
0.010
1
8mer+wobble
4762-4784
0.006
0
6mer
9280-9305
0.002
0
6mer
7276-7303
0.002
1
7mer
6735-6754
0.002
0
6mer
6081-6104
0.002
4
6mer
3297-3303
0.001
1
6mer
1431-1458
0.001
3
6mer
8547-8572
0.001
0
6mer
3532-3548
0.001
3
6mer
1570-1591
0.001
2
6mer
8264-8286
0.001
0
6mer
7910-7927
0.001
0
6mer
3400-3420
0.000
0
RP11-104H15.10
hsa-miR-125b-5p
0.783
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000575331
Biotype: processed_transcript
Gene id: ENSG00000272884
Gene Name: RP11-104H15.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5317-5335
0.009
1
8mer
1347-1372
0.008
5
6mer
356-373
0.003
5
7mer
1113-1126
0.003
2
7mer
939-958
0.003
3
6mer
3765-3790
0.002
4
6mer
4932-4957
0.001
1
6mer
5056-5072
0.001
Not Conserved
6mer
1031-1047
0.001
3
XLOC_009943
hsa-miR-125b-5p
0.783
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020641
Biotype: transcript isomorph
Gene id: XLOC_009943
Gene Name: XLOC_009943
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
329-348
0.029
1
6mer
371-388
0.003
0
MIR223
hsa-miR-125b-5p
0.782
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000621933
Biotype: antisense
Gene id: ENSG00000274536
Gene Name: MIR223
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
512-529
0.032
Not Conserved
CTD-2231E14.8
hsa-miR-125b-5p
0.782
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000597983
Biotype: antisense
Gene id: ENSG00000269243
Gene Name: CTD-2231E14.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
342-349
0.007
1
7mer
590-602
0.007
0
8mer
2633-2647
0.007
0
7mer
215-241
0.005
1
7mer
466-479
0.004
1
6mer
1915-1932
0.001
1
XLOC_007240
hsa-miR-125b-5p
0.782
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00015184
Biotype: transcript isomorph
Gene id: XLOC_007240
Gene Name: XLOC_007240
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
- Kidney Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
104-110
0.032
1
XLOC_003240
hsa-miR-125b-5p
0.782
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006650
Biotype: transcript isomorph
Gene id: XLOC_003240
Gene Name: XLOC_003240
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
8660-8674
0.012
1
7mer
8085-8105
0.007
0
6mer
8441-8463
0.002
3
7mer
7589-7607
0.002
1
6mer
4520-4540
0.002
1
7mer
8415-8435
0.001
0
6mer
1510-1524
0.001
2
6mer
6291-6307
0.001
Not Conserved
6mer
2222-2244
0.001
0
6mer
5974-5986
0.001
1
6mer
6807-6833
0.001
1
6mer
2110-2127
0.001
1
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