LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-125b-5p


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Gene
miRNA
Score
DIANA Links
LINC00475
hsa-miR-125b-5p
0.793
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000416438
Biotype: lincRNA
Gene id: ENSG00000225511
Gene Name: LINC00475
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
473-490
0.013
0
7mer
2154-2170
0.008
0
6mer
2107-2121
0.005
0
7mer
1883-1900
0.004
Not Conserved
6mer
2165-2189
0.003
0
AP000472.2
hsa-miR-125b-5p
0.793
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000419467
Biotype: lincRNA
Gene id: ENSG00000233215
Gene Name: AP000472.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
52-64
0.033
0
HOXA-AS2
hsa-miR-125b-5p
0.793
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000521159
Biotype: antisense
Gene id: ENSG00000253552
Gene Name: HOXA-AS2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
48-68
0.033
5
HOXA-AS2
hsa-miR-125b-5p
0.792
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000517550
Biotype: antisense
Gene id: ENSG00000253552
Gene Name: HOXA-AS2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
239-259
0.033
5
XLOC_004182
hsa-miR-125b-5p
0.792
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008667
Biotype: transcript isomorph
Gene id: XLOC_004182
Gene Name: XLOC_004182
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
- Testes Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1028-1054
0.027
0
6mer
1155-1181
0.006
1
LL22NC03-22D1.1
hsa-miR-125b-5p
0.792
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624601
Biotype: lincRNA
Gene id: ENSG00000279003
Gene Name: LL22NC03-22D1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
18974-19001
0.005
0
7mer
9460-9479
0.004
1
7mer
27434-27439
0.003
1
7mer
11809-11824
0.003
1
6mer
5658-5678
0.002
4
6mer
17658-17662
0.002
2
6mer
3395-3413
0.002
1
6mer
20263-20287
0.002
1
7mer
25093-25118
0.001
1
6mer
12188-12205
0.001
0
6mer
24503-24514
0.001
0
6mer
1976-1984
0.001
Not Conserved
6mer
14070-14074
0.001
2
6mer
9326-9345
0.001
0
6mer
24994-25013
0.001
1
6mer
10303-10323
0.001
0
6mer
10373-10393
0.000
0
6mer
24521-24538
0.000
1
XLOC_009026
hsa-miR-125b-5p
0.792
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019822
Biotype: transcript isomorph
Gene id: XLOC_009026
Gene Name: XLOC_009026
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
90-102
0.033
0
LINC01152
hsa-miR-125b-5p
0.791
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000538693
Biotype: lincRNA
Gene id: ENSG00000256124
Gene Name: LINC01152
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
87-103
0.032
1
RP11-1007I13.4
hsa-miR-125b-5p
0.791
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000509345
Biotype: processed_transcript
Gene id: ENSG00000266560
Gene Name: RP11-1007I13.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
690-709
0.026
1
8mer
348-365
0.006
0
RP11-7F17.3
hsa-miR-125b-5p
0.791
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000555512
Biotype: lincRNA
Gene id: ENSG00000258819
Gene Name: RP11-7F17.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
130-154
0.032
1
MIAT
hsa-miR-125b-5p
0.790
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000616213
Biotype: lincRNA
Gene id: ENSG00000225783
Gene Name: MIAT
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4180-4186
0.011
1
8mer+wobble
4636-4658
0.006
0
6mer
9154-9179
0.002
0
6mer
7150-7177
0.002
1
6mer
5955-5978
0.002
4
7mer
6609-6628
0.002
0
6mer
1305-1332
0.001
3
6mer
3171-3177
0.001
1
6mer
8421-8446
0.001
0
6mer
1444-1465
0.001
2
6mer
3406-3422
0.001
3
6mer
8138-8160
0.001
0
6mer
7784-7801
0.001
0
6mer
3274-3294
0.000
0
HOXB-AS3
hsa-miR-125b-5p
0.789
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000460041
Biotype: antisense
Gene id: ENSG00000233101
Gene Name: HOXB-AS3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
26-43
0.025
8
6mer
119-128
0.004
3
7mer
379-397
0.003
0
RP11-7F17.3
hsa-miR-125b-5p
0.789
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000557526
Biotype: lincRNA
Gene id: ENSG00000258819
Gene Name: RP11-7F17.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1613-1637
0.030
1
6mer
1325-1352
0.003
4
CASK-AS1
hsa-miR-125b-5p
0.789
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000451126
Biotype: antisense
Gene id: ENSG00000233033
Gene Name: CASK-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
477-502
0.032
1
NEAT1
hsa-miR-125b-5p
0.788
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000501122
Biotype: lincRNA
Gene id: ENSG00000245532
Gene Name: NEAT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
11856-11872
0.011
1
7mer
45-66
0.008
0
7mer
17739-17765
0.004
1
6mer
333-350
0.003
1
6mer
61-86
0.002
0
6mer
49-75
0.002
Not Conserved
6mer
6467-6492
0.001
1
6mer
13240-13260
0.001
0
6mer
19679-19702
0.001
1
6mer
13340-13367
0.000
1
ZNF833P
hsa-miR-125b-5p
0.788
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000344893
Biotype: lincRNA
Gene id: ENSG00000197332
Gene Name: ZNF833P
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3039-3060
0.031
0
6mer
1239-1260
0.001
0
LINC00599
hsa-miR-125b-5p
0.787
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000517675
Biotype: lincRNA
Gene id: ENSG00000253230
Gene Name: LINC00599
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3116-3131
0.020
1
7mer
2454-2473
0.008
1
7mer
2866-2883
0.003
0
6mer
1961-1979
0.001
1
MIAT
hsa-miR-125b-5p
0.787
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000613780
Biotype: lincRNA
Gene id: ENSG00000225783
Gene Name: MIAT
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4380-4386
0.010
1
8mer+wobble
4836-4858
0.006
0
6mer
9354-9379
0.002
0
6mer
7350-7377
0.002
1
7mer
6809-6828
0.002
0
6mer
6155-6178
0.002
4
6mer
3371-3377
0.001
1
6mer
1379-1406
0.001
3
6mer
8621-8646
0.001
0
6mer
1518-1539
0.001
2
6mer
8338-8360
0.001
0
6mer
3606-3622
0.001
3
6mer
7984-8001
0.001
0
6mer
3474-3494
0.000
0
RP5-1063M23.1
hsa-miR-125b-5p
0.787
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000505276
Biotype: lincRNA
Gene id: ENSG00000250770
Gene Name: RP5-1063M23.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2069-2085
0.026
1
6mer
628-644
0.005
3
6mer
1406-1433
0.002
1
XLOC_002488
hsa-miR-125b-5p
0.786
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004577
Biotype: transcript isomorph
Gene id: XLOC_002488
Gene Name: XLOC_002488
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1799-1805
0.031
2
6mer
575-600
0.001
0
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