LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-125b-5p


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Gene
miRNA
Score
DIANA Links
RP11-501J20.5
hsa-miR-125b-5p
0.800
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000425264
Biotype: antisense
Gene id: ENSG00000225936
Gene Name: RP11-501J20.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
121-143
0.016
0
7mer
621-636
0.011
7
6mer
201-223
0.004
3
6mer
60-86
0.003
0
HOXA-AS2
hsa-miR-125b-5p
0.799
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000517635
Biotype: antisense
Gene id: ENSG00000253552
Gene Name: HOXA-AS2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1673-1693
0.024
5
7mer
2409-2426
0.005
1
7mer
1824-1844
0.003
Not Conserved
6mer
358-381
0.002
2
RP11-301L8.2
hsa-miR-125b-5p
0.798
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000411847
Biotype: antisense
Gene id: ENSG00000233110
Gene Name: RP11-301L8.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1011-1027
0.017
1
9mer
164-187
0.016
0
ZFP91-CNTF
hsa-miR-125b-5p
0.798
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: NR_024091.1
Biotype: sense
Gene id: NR_024091.1 (gene)
Gene Name: ZFP91-CNTF
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
905-921
0.020
8
6mer
462-487
0.005
7
6mer
1831-1857
0.003
8
6mer
1619-1639
0.002
6
6mer
2605-2630
0.001
1
6mer
2584-2609
0.001
2
RP11-197N18.7
hsa-miR-125b-5p
0.798
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000506255
Biotype: lincRNA
Gene id: ENSG00000251497
Gene Name: RP11-197N18.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
113-129
0.022
1
6mer
428-447
0.003
1
6mer
1473-1480
0.002
1
6mer
156-176
0.002
0
6mer
1915-1942
0.002
1
6mer
693-705
0.002
Not Conserved
XLOC_011614
hsa-miR-125b-5p
0.798
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023840
Biotype: transcript isomorph
Gene id: XLOC_011614
Gene Name: XLOC_011614
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
370-376
0.031
3
6mer
740-754
0.003
0
RP11-231E6.1
hsa-miR-125b-5p
0.798
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000486726
Biotype: lincRNA
Gene id: ENSG00000243081
Gene Name: RP11-231E6.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1441-1452
0.027
1
6mer
1489-1494
0.006
1
XLOC_004072
hsa-miR-125b-5p
0.797
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00007434
Biotype: transcript isomorph
Gene id: XLOC_004072
Gene Name: XLOC_004072
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1160-1179
0.033
4
XLOC_004581
hsa-miR-125b-5p
0.797
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009526
Biotype: transcript isomorph
Gene id: XLOC_004581
Gene Name: XLOC_004581
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
51-65
0.018
0
7mer
3286-3299
0.008
2
6mer
806-820
0.002
0
6mer
3053-3075
0.002
1
6mer
2404-2429
0.002
1
6mer
1534-1555
0.001
2
6mer
901-920
0.001
0
CTB-12A17.3
hsa-miR-125b-5p
0.797
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000597609
Biotype: antisense
Gene id: ENSG00000269292
Gene Name: CTB-12A17.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
57-80
0.033
1
RP11-90M2.5
hsa-miR-125b-5p
0.796
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000616786
Biotype: antisense
Gene id: ENSG00000276968
Gene Name: RP11-90M2.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
209-229
0.033
1
CTC-471J1.8
hsa-miR-125b-5p
0.796
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000594362
Biotype: processed_transcript
Gene id: ENSG00000267827
Gene Name: CTC-471J1.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
134-157
0.015
1
7mer
168-184
0.013
0
6mer
151-176
0.005
2
RP11-227G15.9
hsa-miR-125b-5p
0.795
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000584125
Biotype: lincRNA
Gene id: ENSG00000264083
Gene Name: RP11-227G15.9
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
512-534
0.033
0
XLOC_000340
hsa-miR-125b-5p
0.795
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001092
Biotype: transcript isomorph
Gene id: XLOC_000340
Gene Name: XLOC_000340
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
Fibroblasts Foreskin Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1889-1915
0.020
1
7mer
1970-1996
0.013
0
CTD-2017D11.1
hsa-miR-125b-5p
0.795
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000597683
Biotype: lincRNA
Gene id: ENSG00000268362
Gene Name: CTD-2017D11.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1659-1680
0.013
0
6mer
1587-1612
0.011
1
6mer
544-562
0.009
1
CH17-264L24.1
hsa-miR-125b-5p
0.795
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624350
Biotype: lincRNA
Gene id: ENSG00000279278
Gene Name: CH17-264L24.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
7188-7209
0.014
0
8mer
2626-2644
0.004
0
6mer
419-443
0.004
0
7mer
1287-1312
0.003
0
8mer
3810-3826
0.002
0
7mer
4077-4101
0.002
0
6mer
5810-5827
0.002
0
6mer
1933-1953
0.001
0
6mer
4148-4173
0.001
0
6mer
3755-3771
0.001
Not Conserved
RP11-400F19.18
hsa-miR-125b-5p
0.795
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000591237
Biotype: sense_intronic
Gene id: ENSG00000267632
Gene Name: RP11-400F19.18
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
64-70
0.033
2
CTD-2303H24.2
hsa-miR-125b-5p
0.794
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000609578
Biotype: retained_intron
Gene id: ENSG00000273018
Gene Name: CTD-2303H24.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
611-633
0.033
Not Conserved
RP11-135J2.3
hsa-miR-125b-5p
0.793
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000420237
Biotype: lincRNA
Gene id: ENSG00000223842
Gene Name: RP11-135J2.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
182-205
0.027
1
6mer
118-129
0.005
1
LINC01410
hsa-miR-125b-5p
0.793
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000424345
Biotype: lincRNA
Gene id: ENSG00000238113
Gene Name: LINC01410
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1379-1400
0.030
0
6mer
2526-2543
0.002
Not Conserved
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