LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-125b-5p


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Gene
miRNA
Score
DIANA Links
RP11-29G8.3
hsa-miR-125b-5p
0.809
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000570285
Biotype: processed_transcript
Gene id: ENSG00000261553
Gene Name: RP11-29G8.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
HeLa Cervix Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
296-315
0.034
2
XLOC_009857
hsa-miR-125b-5p
0.808
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020542
Biotype: transcript isomorph
Gene id: XLOC_009857
Gene Name: XLOC_009857
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
129-154
0.024
1
7mer
114-132
0.010
0
KRTAP5-AS1
hsa-miR-125b-5p
0.808
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000424148
Biotype: antisense
Gene id: ENSG00000233930
Gene Name: KRTAP5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
718-740
0.013
0
8mer
1938-1956
0.007
0
8mer
692-712
0.004
1
7mer
573-599
0.003
0
6mer
490-506
0.003
0
6mer
528-540
0.002
0
6mer
808-825
0.002
1
KIF9-AS1
hsa-miR-125b-5p
0.807
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000429315
Biotype: antisense
Gene id: ENSG00000227398
Gene Name: KIF9-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
469-485
0.019
3
8mer
2178-2194
0.007
0
7mer
414-428
0.003
0
6mer
4333-4352
0.002
1
7mer
3285-3310
0.001
1
6mer
2499-2517
0.001
1
6mer
2280-2296
0.001
1
XLOC_000978
hsa-miR-125b-5p
0.807
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001640
Biotype: transcript isomorph
Gene id: XLOC_000978
Gene Name: XLOC_000978
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Breast Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
544-565
0.034
0
AC008271.1
hsa-miR-125b-5p
0.807
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000492352
Biotype: lincRNA
Gene id: ENSG00000231031
Gene Name: AC008271.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1269-1287
0.026
1
6mer
1659-1676
0.008
6
RP11-20J15.3
hsa-miR-125b-5p
0.807
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000452578
Biotype: lincRNA
Gene id: ENSG00000229116
Gene Name: RP11-20J15.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
763-787
0.024
0
6mer
1026-1040
0.010
1
MKLN1-AS
hsa-miR-125b-5p
0.806
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000429067
Biotype: antisense
Gene id: ENSG00000236753
Gene Name: MKLN1-AS
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2004-2028
0.034
0
XLOC_011712
hsa-miR-125b-5p
0.805
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024385
Biotype: transcript isomorph
Gene id: XLOC_011712
Gene Name: XLOC_011712
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
280-303
0.034
1
RP11-91H12.4
hsa-miR-125b-5p
0.805
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000502813
Biotype: sense_overlapping
Gene id: ENSG00000250820
Gene Name: RP11-91H12.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
328-349
0.031
1
6mer
478-502
0.002
Not Conserved
RP11-686D22.5
hsa-miR-125b-5p
0.805
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000589099
Biotype: lincRNA
Gene id: ENSG00000267711
Gene Name: RP11-686D22.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
63-83
0.034
Not Conserved
RP1-228P16.8
hsa-miR-125b-5p
0.805
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000616571
Biotype: lincRNA
Gene id: ENSG00000276814
Gene Name: RP1-228P16.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
574-595
0.034
5
C15orf37
hsa-miR-125b-5p
0.805
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000560255
Biotype: antisense
Gene id: ENSG00000259642
Gene Name: C15orf37
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4001-4021
0.024
0
7mer
3873-3892
0.008
0
7mer
1770-1796
0.002
0
RP13-467H17.1
hsa-miR-125b-5p
0.804
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000569285
Biotype: antisense
Gene id: ENSG00000261693
Gene Name: RP13-467H17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1955-1981
0.015
0
7mer
1444-1458
0.008
1
8mer+mismatch
3179-3196
0.007
1
6mer
1003-1019
0.003
1
6mer
1014-1039
0.001
0
LL0XNC01-7P3.1
hsa-miR-125b-5p
0.804
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000602455
Biotype: lincRNA
Gene id: ENSG00000270012
Gene Name: LL0XNC01-7P3.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
641-657
0.029
2
6mer
2484-2497
0.003
1
6mer
908-930
0.002
3
XLOC_001835
hsa-miR-125b-5p
0.804
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004997
Biotype: transcript isomorph
Gene id: XLOC_001835
Gene Name: XLOC_001835
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
288-311
0.034
1
RP4-669P10.16
hsa-miR-125b-5p
0.803
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000428786
Biotype: lincRNA
Gene id: ENSG00000232710
Gene Name: RP4-669P10.16
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
526-541
0.010
1
8mer
324-344
0.009
0
7mer
608-617
0.006
0
6mer
178-203
0.005
1
RP11-347J14.7
hsa-miR-125b-5p
0.803
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000423499
Biotype: lincRNA
Gene id: ENSG00000231140
Gene Name: RP11-347J14.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Ovary Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
701-708
0.034
0
ZNRD1-AS1
hsa-miR-125b-5p
0.803
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000431012
Biotype: antisense
Gene id: ENSG00000204623
Gene Name: ZNRD1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
450-474
0.022
1
8mer
1531-1537
0.011
Not Conserved
DKFZp434L192
hsa-miR-125b-5p
0.803
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000566570
Biotype: lincRNA
Gene id: ENSG00000261275
Gene Name: DKFZp434L192
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3508-3526
0.011
0
7mer
809-835
0.010
0
6mer
416-435
0.004
1
7mer
3674-3696
0.004
0
6mer
2681-2700
0.003
1
6mer
860-879
0.002
0
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