LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-125b-5p


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Gene
miRNA
Score
DIANA Links
DLX6-AS1
hsa-miR-125b-5p
0.813
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_015448.1
Biotype: antisense
Gene id: NR_015448.1 (gene)
Gene Name: DLX6-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
267-287
0.022
1
8mer+mismatch
2-20
0.005
1
6mer
166-185
0.004
1
6mer
130-152
0.003
0
XLOC_004629
hsa-miR-125b-5p
0.813
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010166
Biotype: transcript isomorph
Gene id: XLOC_004629
Gene Name: XLOC_004629
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2132-2159
0.035
0
ZNF888
hsa-miR-125b-5p
0.813
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000596623
Biotype: lincRNA
Gene id: ENSG00000213793
Gene Name: ZNF888
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
109-135
0.020
2
7mer
326-342
0.015
1
LINC01118
hsa-miR-125b-5p
0.813
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000479311
Biotype: lincRNA
Gene id: ENSG00000222005
Gene Name: LINC01118
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Skeletal Muscle Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
292-311
0.035
0
LINC00461
hsa-miR-125b-5p
0.813
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000500197
Biotype: lincRNA
Gene id: ENSG00000245526
Gene Name: LINC00461
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3345-3361
0.021
6
7mer
2124-2140
0.011
1
6mer
3205-3232
0.003
2
XLOC_014162
hsa-miR-125b-5p
0.813
mTTBlnEmP

Gene Details
Chromosome: chr22
Transcript: TCONS_00029320
Biotype: transcript isomorph
Gene id: XLOC_014162
Gene Name: XLOC_014162
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
471-495
0.019
1
7mer
179-196
0.007
0
7mer
1457-1477
0.004
1
6mer
4646-4662
0.002
1
6mer
1645-1664
0.001
1
6mer
1171-1195
0.001
1
6mer
1189-1210
0.000
2
RP11-59C5.3
hsa-miR-125b-5p
0.813
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000617058
Biotype: antisense
Gene id: ENSG00000273599
Gene Name: RP11-59C5.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4982-5007
0.024
1
6mer
5367-5384
0.005
1
7mer
2485-2505
0.002
1
6mer
1587-1602
0.002
3
6mer
2766-2782
0.001
0
6mer
3798-3818
0.001
1
LINC00599
hsa-miR-125b-5p
0.812
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000519461
Biotype: lincRNA
Gene id: ENSG00000253230
Gene Name: LINC00599
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2772-2787
0.021
1
7mer
2110-2129
0.009
1
7mer
2522-2539
0.003
0
6mer
1617-1635
0.001
1
XLOC_002476
hsa-miR-125b-5p
0.811
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003490
Biotype: transcript isomorph
Gene id: XLOC_002476
Gene Name: XLOC_002476
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
236-252
0.035
1
XLOC_005501
hsa-miR-125b-5p
0.811
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012617
Biotype: transcript isomorph
Gene id: XLOC_005501
Gene Name: XLOC_005501
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1444-1461
0.022
1
6mer
1183-1199
0.007
1
6mer
758-773
0.006
1
CADM3-AS1
hsa-miR-125b-5p
0.811
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000415675
Biotype: antisense
Gene id: ENSG00000225670
Gene Name: CADM3-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
668-681
0.015
1
7mer
585-604
0.009
2
8mer
1214-1241
0.004
1
6mer
973-993
0.002
5
6mer
824-839
0.002
5
6mer
859-879
0.001
2
6mer
948-971
0.001
2
RP11-6N17.2
hsa-miR-125b-5p
0.810
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000580282
Biotype: lincRNA
Gene id: ENSG00000266821
Gene Name: RP11-6N17.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2644-2655
0.023
2
7mer
2534-2551
0.009
2
6mer
928-944
0.002
0
SPACA6P
hsa-miR-125b-5p
0.810
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000331594
Biotype: pseudogene
Gene id: ENSG00000182310
Gene Name: SPACA6P
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
913-939
0.029
1
6mer
209-229
0.006
4
AP001055.6
hsa-miR-125b-5p
0.810
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000411694
Biotype: lincRNA
Gene id: ENSG00000225331
Gene Name: AP001055.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
484-509
0.034
1
PCAT19
hsa-miR-125b-5p
0.810
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000599801
Biotype: lincRNA
Gene id: ENSG00000267107
Gene Name: PCAT19
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
7-16
0.034
0
RP11-421P23.2
hsa-miR-125b-5p
0.810
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000517994
Biotype: lincRNA
Gene id: ENSG00000254040
Gene Name: RP11-421P23.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
42-62
0.034
3
RP11-809O17.1
hsa-miR-125b-5p
0.810
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000520885
Biotype: antisense
Gene id: ENSG00000253210
Gene Name: RP11-809O17.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
73-99
0.034
1
RP11-498M15.1
hsa-miR-125b-5p
0.809
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000549710
Biotype: lincRNA
Gene id: ENSG00000257515
Gene Name: RP11-498M15.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
536-562
0.034
0
CTD-2036P10.3
hsa-miR-125b-5p
0.809
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000500850
Biotype: lincRNA
Gene id: ENSG00000246283
Gene Name: CTD-2036P10.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
178-194
0.019
1
7mer
1784-1802
0.013
3
6mer
466-483
0.002
2
XLOC_011117
hsa-miR-125b-5p
0.809
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022385
Biotype: transcript isomorph
Gene id: XLOC_011117
Gene Name: XLOC_011117
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4810-4837
0.011
3
7mer
451-476
0.011
1
7mer
2139-2144
0.008
2
6mer
490-506
0.003
0
6mer
471-496
0.002
0
6mer
2054-2078
0.001
1
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