LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-125b-5p


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Gene
miRNA
Score
DIANA Links
RP11-473M20.16
hsa-miR-125b-5p
0.819
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000570843
Biotype: lincRNA
Gene id: ENSG00000261889
Gene Name: RP11-473M20.16
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
698-718
0.035
1
RP11-219C24.10
hsa-miR-125b-5p
0.819
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000432559
Biotype: lincRNA
Gene id: ENSG00000228229
Gene Name: RP11-219C24.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
31-56
0.017
0
7mer
183-195
0.013
Not Conserved
7mer
10-37
0.006
Not Conserved
AC005481.5
hsa-miR-125b-5p
0.819
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000409610
Biotype: antisense
Gene id: ENSG00000222012
Gene Name: AC005481.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
91-109
0.024
1
6mer
62-66
0.005
1
6mer
3181-3202
0.003
0
6mer
2857-2877
0.002
0
6mer
2798-2819
0.002
0
XLOC_009021
hsa-miR-125b-5p
0.818
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019195
Biotype: transcript isomorph
Gene id: XLOC_009021
Gene Name: XLOC_009021
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2510-2532
0.020
1
6mer
146-165
0.004
1
7mer
1073-1099
0.004
Not Conserved
7mer
701-717
0.003
0
6mer
2047-2068
0.002
0
6mer
2098-2113
0.001
1
RP5-940F7.2
hsa-miR-125b-5p
0.818
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000438371
Biotype: lincRNA
Gene id: ENSG00000237845
Gene Name: RP5-940F7.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
396-416
0.035
1
RP11-822E23.8
hsa-miR-125b-5p
0.818
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000468381
Biotype: processed_transcript
Gene id: ENSG00000272780
Gene Name: RP11-822E23.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
114-138
0.020
0
7mer
306-325
0.006
0
7mer
1633-1653
0.005
1
6mer
448-471
0.002
Not Conserved
6mer
1361-1388
0.001
0
AC079612.1
hsa-miR-125b-5p
0.817
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000358775
Biotype: lincRNA
Gene id: ENSG00000196758
Gene Name: AC079612.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3261-3283
0.031
0
6mer
2981-3007
0.002
0
7mer
1405-1429
0.001
0
6mer
1049-1071
0.001
0
RP11-71N10.1
hsa-miR-125b-5p
0.817
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000467198
Biotype: lincRNA
Gene id: ENSG00000239922
Gene Name: RP11-71N10.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1710-1728
0.035
6
RP11-349H17.2
hsa-miR-125b-5p
0.817
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000615734
Biotype: sense_intronic
Gene id: ENSG00000275805
Gene Name: RP11-349H17.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1262-1278
0.027
0
6mer
640-666
0.006
6
6mer
1210-1237
0.002
1
FLJ33581
hsa-miR-125b-5p
0.817
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000457274
Biotype: lincRNA
Gene id: ENSG00000230133
Gene Name: FLJ33581
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
94-117
0.016
0
7mer
1571-1595
0.009
0
7mer
1346-1361
0.009
1
6mer
1876-1901
0.001
Not Conserved
CTA-342B11.3
hsa-miR-125b-5p
0.817
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624235
Biotype: lincRNA
Gene id: ENSG00000280370
Gene Name: CTA-342B11.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
13786-13793
0.023
1
6mer
23864-23881
0.003
0
7mer
2703-2711
0.002
1
6mer
9656-9674
0.002
0
6mer
5289-5313
0.002
5
6mer
5140-5160
0.002
3
6mer
6573-6594
0.001
0
6mer
5375-5399
0.001
5
MKLN1-AS
hsa-miR-125b-5p
0.816
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000416220
Biotype: antisense
Gene id: ENSG00000236753
Gene Name: MKLN1-AS
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
519-543
0.035
0
RP11-169F17.1
hsa-miR-125b-5p
0.816
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000581011
Biotype: lincRNA
Gene id: ENSG00000263711
Gene Name: RP11-169F17.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
345-371
0.024
1
8mer
630-647
0.010
0
6mer
913-938
0.001
0
LINC00560
hsa-miR-125b-5p
0.816
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000564593
Biotype: lincRNA
Gene id: ENSG00000261666
Gene Name: LINC00560
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1404-1421
0.018
0
8mer
1278-1300
0.017
1
PSMG3-AS1
hsa-miR-125b-5p
0.816
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000457484
Biotype: lincRNA
Gene id: ENSG00000230487
Gene Name: PSMG3-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3556-3575
0.016
0
7mer
3594-3605
0.008
0
7mer
1198-1219
0.004
1
6mer
3474-3498
0.003
1
6mer
2656-2674
0.002
0
6mer
2085-2105
0.001
0
6mer
2091-2116
0.000
1
XLOC_013039
hsa-miR-125b-5p
0.816
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00026989
Biotype: transcript isomorph
Gene id: XLOC_013039
Gene Name: XLOC_013039
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1015-1020
0.021
1
7mer
811-828
0.007
0
7mer
156-170
0.007
0
MIR223
hsa-miR-125b-5p
0.815
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000618234
Biotype: antisense
Gene id: ENSG00000274536
Gene Name: MIR223
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
387-404
0.035
Not Conserved
MEG3
hsa-miR-125b-5p
0.815
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000522771
Biotype: lincRNA
Gene id: ENSG00000214548
Gene Name: MEG3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
93-114
0.018
1
7mer
6729-6749
0.013
1
7mer
2784-2798
0.003
1
6mer
5670-5695
0.001
Not Conserved
LINC00664
hsa-miR-125b-5p
0.814
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000596718
Biotype: lincRNA
Gene id: ENSG00000268658
Gene Name: LINC00664
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1436-1455
0.017
0
7mer
39-64
0.015
1
6mer
1685-1689
0.002
1
RP11-114F10.3
hsa-miR-125b-5p
0.814
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000548901
Biotype: antisense
Gene id: ENSG00000257438
Gene Name: RP11-114F10.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
168-185
0.024
Not Conserved
7mer
546-563
0.010
1
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