LncBase Predicted v.2
Help
Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
Bulk download:
We have updated the bulk download module, which simplifies the download process! Please find the new online form by following this link
Deprecated!
This version is deprecated. Users are strongly advised to only use the latest, up-to-date versions of DIANA-Tools and Databases.
Please follow this link to navigate to the latest database version.

hsa-miR-125b-5p


or   Search by location
Loading... Please wait, this might take a few seconds...



Go to Experimental module
Filters

Gene
miRNA
Score
DIANA Links
HOXC-AS3
hsa-miR-125b-5p
0.825
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000513165
Biotype: antisense
Gene id: ENSG00000251151
Gene Name: HOXC-AS3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
483-494
0.036
6
PROX1-AS1
hsa-miR-125b-5p
0.825
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000433082
Biotype: antisense
Gene id: ENSG00000230461
Gene Name: PROX1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
380-401
0.027
1
6mer
972-993
0.002
4
6mer
1069-1074
0.002
1
6mer
2247-2251
0.001
0
6mer
1691-1712
0.001
3
6mer
373-383
0.001
0
6mer
3446-3469
0.001
1
RP11-288H12.4
hsa-miR-125b-5p
0.825
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000604521
Biotype: lincRNA
Gene id: ENSG00000270949
Gene Name: RP11-288H12.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2985-2990
0.022
1
7mer
1969-1984
0.010
1
6mer
1001-1017
0.004
1
FLJ36777
hsa-miR-125b-5p
0.825
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000501888
Biotype: lincRNA
Gene id: ENSG00000245468
Gene Name: FLJ36777
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
421-443
0.012
1
7mer
1764-1790
0.011
1
7mer
1788-1803
0.008
1
6mer
1710-1727
0.005
1
XLOC_010023
hsa-miR-125b-5p
0.825
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020723
Biotype: transcript isomorph
Gene id: XLOC_010023
Gene Name: XLOC_010023
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
475-498
0.019
0
7mer
846-867
0.017
0
LINC00359
hsa-miR-125b-5p
0.824
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000442322
Biotype: lincRNA
Gene id: ENSG00000243300
Gene Name: LINC00359
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
687-713
0.036
1
RP11-684B21.1
hsa-miR-125b-5p
0.824
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000560056
Biotype: lincRNA
Gene id: ENSG00000259245
Gene Name: RP11-684B21.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
352-379
0.021
5
7mer
144-160
0.015
2
RP11-310E22.4
hsa-miR-125b-5p
0.824
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000451737
Biotype: antisense
Gene id: ENSG00000234026
Gene Name: RP11-310E22.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
199-226
0.026
1
7mer
333-346
0.010
1
TTN-AS1
hsa-miR-125b-5p
0.823
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000604571
Biotype: antisense
Gene id: ENSG00000237298
Gene Name: TTN-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
439-463
0.036
4
RP11-108M9.3
hsa-miR-125b-5p
0.823
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000619677
Biotype: pseudogene
Gene id: ENSG00000228549
Gene Name: RP11-108M9.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
747-770
0.025
0
6mer
670-695
0.011
2
TTN-AS1
hsa-miR-125b-5p
0.823
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000587568
Biotype: antisense
Gene id: ENSG00000237298
Gene Name: TTN-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
461-485
0.036
4
TSIX
hsa-miR-125b-5p
0.823
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000604411
Biotype: lincRNA
Gene id: ENSG00000270641
Gene Name: TSIX
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
21960-21973
0.005
2
7mer
15281-15305
0.005
Not Conserved
7mer
7574-7592
0.003
0
7mer
27813-27837
0.003
2
6mer
33797-33813
0.003
7
7mer
14923-14943
0.002
Not Conserved
7mer
24497-24503
0.002
0
6mer
4565-4586
0.002
1
6mer
13626-13651
0.002
Not Conserved
6mer
4349-4364
0.002
1
6mer
33275-33297
0.002
4
6mer
8681-8697
0.001
0
6mer
15964-15978
0.001
Not Conserved
6mer
12790-12803
0.001
Not Conserved
6mer
12304-12318
0.001
Not Conserved
6mer
13095-13115
0.001
Not Conserved
6mer
33347-33364
0.001
1
RP11-111I12.1
hsa-miR-125b-5p
0.822
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000445180
Biotype: lincRNA
Gene id: ENSG00000233399
Gene Name: RP11-111I12.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
811-823
0.020
0
7mer
311-326
0.008
0
7mer
1345-1364
0.008
1
RP1-45N11.1
hsa-miR-125b-5p
0.822
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000569865
Biotype: lincRNA
Gene id: ENSG00000260271
Gene Name: RP1-45N11.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Lymph Node Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1339-1360
0.033
7
6mer
1156-1170
0.003
1
XLOC_009608
hsa-miR-125b-5p
0.822
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00020155
Biotype: transcript isomorph
Gene id: XLOC_009608
Gene Name: XLOC_009608
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
353-379
0.019
2
7mer
176-183
0.017
1
LOC100131825
hsa-miR-125b-5p
0.822
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_037870.1
Biotype: antisense
Gene id: NR_037870.1 (gene)
Gene Name: LOC100131825
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
668-681
0.015
1
7mer
585-604
0.010
2
8mer
1214-1241
0.004
1
6mer
973-993
0.002
5
6mer
824-839
0.002
5
6mer
859-879
0.001
2
6mer
948-971
0.001
2
RP11-672A2.1
hsa-miR-125b-5p
0.821
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000525328
Biotype: lincRNA
Gene id: ENSG00000254761
Gene Name: RP11-672A2.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
420-426
0.015
0
8mer
252-269
0.015
0
6mer
609-631
0.002
0
6mer
187-209
0.002
0
6mer
519-537
0.001
0
XLOC_006073
hsa-miR-125b-5p
0.820
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00014122
Biotype: transcript isomorph
Gene id: XLOC_006073
Gene Name: XLOC_006073
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
79-98
0.022
1
6mer
1013-1034
0.006
1
6mer
507-529
0.005
1
6mer
570-588
0.003
0
RP11-96D1.9
hsa-miR-125b-5p
0.820
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000575953
Biotype: sense_intronic
Gene id: ENSG00000262514
Gene Name: RP11-96D1.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
202-208
0.032
3
6mer
510-531
0.003
1
LINC01132
hsa-miR-125b-5p
0.819
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000437601
Biotype: lincRNA
Gene id: ENSG00000227630
Gene Name: LINC01132
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
179-195
0.010
3
8mer
1711-1728
0.009
0
8mer
3110-3126
0.007
1
8mer
1791-1813
0.003
3
6mer
290-311
0.002
1
6mer
2977-2993
0.002
1
7mer
3110-3135
0.002
1
Funded by:
We have placed cookies on your device to help make this website and the services we offer better. By using this site, you agree to the use of cookies. Learn more
I accept