LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-125b-5p


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Gene
miRNA
Score
DIANA Links
RP11-576I22.2
hsa-miR-125b-5p
0.833
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000421020
Biotype: antisense
Gene id: ENSG00000231407
Gene Name: RP11-576I22.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
504-521
0.022
1
7mer
227-248
0.015
1
XLOC_000266
hsa-miR-125b-5p
0.833
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001003
Biotype: transcript isomorph
Gene id: XLOC_000266
Gene Name: XLOC_000266
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
135-158
0.019
0
9mer
184-204
0.015
0
6mer
260-280
0.002
0
XLOC_002424
hsa-miR-125b-5p
0.833
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004518
Biotype: transcript isomorph
Gene id: XLOC_002424
Gene Name: XLOC_002424
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
93-113
0.037
0
RP11-64D24.4
hsa-miR-125b-5p
0.832
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000534904
Biotype: antisense
Gene id: ENSG00000256195
Gene Name: RP11-64D24.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3176-3194
0.024
1
8mer
2277-2298
0.006
0
7mer
2201-2224
0.004
1
6mer
944-948
0.002
0
CTC-459F4.3
hsa-miR-125b-5p
0.832
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000588784
Biotype: lincRNA
Gene id: ENSG00000267575
Gene Name: CTC-459F4.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1099-1125
0.016
0
6mer
1473-1494
0.007
0
6mer
430-453
0.007
0
6mer
1000-1024
0.005
0
6mer
1949-1962
0.002
Not Conserved
CTA-445C9.15
hsa-miR-125b-5p
0.832
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000564772
Biotype: lincRNA
Gene id: ENSG00000260065
Gene Name: CTA-445C9.15
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
169-194
0.037
1
XLOC_002909
hsa-miR-125b-5p
0.831
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00005388
Biotype: transcript isomorph
Gene id: XLOC_002909
Gene Name: XLOC_002909
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Lung Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1974-1998
0.013
1
7mer
3115-3120
0.011
0
7mer
1661-1682
0.007
Not Conserved
7mer
2259-2267
0.004
0
6mer
1196-1200
0.002
1
U47924.30
hsa-miR-125b-5p
0.831
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000606112
Biotype: lincRNA
Gene id: ENSG00000272201
Gene Name: U47924.30
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1303-1323
0.018
1
7mer
1196-1215
0.015
1
6mer
1265-1283
0.004
1
C1orf147
hsa-miR-125b-5p
0.831
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000367119
Biotype: antisense
Gene id: ENSG00000162888
Gene Name: C1orf147
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
128-133
0.012
3
8mer
286-303
0.012
0
6mer
1456-1481
0.003
1
6mer
64-86
0.003
0
6mer
318-330
0.003
1
7mer
717-738
0.002
0
6mer
773-785
0.002
0
XLOC_008506
hsa-miR-125b-5p
0.830
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00017838
Biotype: transcript isomorph
Gene id: XLOC_008506
Gene Name: XLOC_008506
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4175-4196
0.014
3
7mer
3884-3897
0.011
1
7mer
2260-2267
0.002
1
6mer
4102-4119
0.002
0
6mer
885-905
0.002
1
6mer
2452-2457
0.002
3
6mer
1994-2012
0.001
0
6mer
2648-2661
0.001
1
6mer
2546-2565
0.001
0
NARF-IT1
hsa-miR-125b-5p
0.830
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000584012
Biotype: sense_intronic
Gene id: ENSG00000266236
Gene Name: NARF-IT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
87-108
0.037
1
SLX1A-SULT1A3
hsa-miR-125b-5p
0.828
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: NR_037608.1
Biotype: sense
Gene id: NR_037608.1 (gene)
Gene Name: SLX1A-SULT1A3
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
20-36
0.025
0
8mer
289-309
0.007
0
7mer
1172-1196
0.003
1
6mer
262-285
0.002
1
RP11-431J24.2
hsa-miR-125b-5p
0.828
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000435789
Biotype: antisense
Gene id: ENSG00000238178
Gene Name: RP11-431J24.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
991-1007
0.034
1
6mer
289-309
0.002
Not Conserved
BGLT3
hsa-miR-125b-5p
0.828
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000564523
Biotype: sense_overlapping
Gene id: ENSG00000260629
Gene Name: BGLT3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
495-512
0.036
0
XLOC_011300
hsa-miR-125b-5p
0.828
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023454
Biotype: transcript isomorph
Gene id: XLOC_011300
Gene Name: XLOC_011300
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
153-166
0.036
1
XLOC_001362
hsa-miR-125b-5p
0.827
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00002688
Biotype: transcript isomorph
Gene id: XLOC_001362
Gene Name: XLOC_001362
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1361-1379
0.026
1
6mer
1751-1768
0.008
6
6mer
729-735
0.003
0
RP5-1184F4.5
hsa-miR-125b-5p
0.827
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000442179
Biotype: antisense
Gene id: ENSG00000236772
Gene Name: RP5-1184F4.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
750-767
0.029
2
7mer
952-978
0.007
3
LINC00200
hsa-miR-125b-5p
0.826
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000425630
Biotype: lincRNA
Gene id: ENSG00000229205
Gene Name: LINC00200
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
292-310
0.011
0
7mer
1201-1218
0.006
1
6mer
2275-2279
0.005
1
6mer
478-498
0.003
1
7mer
1275-1302
0.003
0
6mer
643-669
0.003
1
7mer
1243-1260
0.002
0
6mer
1528-1549
0.002
0
RP11-19D2.2
hsa-miR-125b-5p
0.826
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000569178
Biotype: lincRNA
Gene id: ENSG00000261249
Gene Name: RP11-19D2.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
652-674
0.036
4
XLOC_009474
hsa-miR-125b-5p
0.826
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019666
Biotype: transcript isomorph
Gene id: XLOC_009474
Gene Name: XLOC_009474
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3838-3857
0.027
3
6mer
7103-7124
0.008
9
6mer
2219-2236
0.001
1
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