LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-125b-5p


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Gene
miRNA
Score
DIANA Links
RP3-468B3.2
hsa-miR-125b-5p
0.839
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000530000
Biotype: lincRNA
Gene id: ENSG00000233183
Gene Name: RP3-468B3.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
431-451
0.010
0
9mer
5212-5235
0.008
0
7mer
4071-4090
0.005
1
8mer
5196-5215
0.005
0
6mer
691-712
0.002
1
8mer+wobble
4461-4481
0.002
1
6mer
1240-1264
0.001
1
6mer
2066-2085
0.001
2
6mer
931-948
0.001
2
6mer
2474-2489
0.001
0
6mer
2279-2294
0.001
1
6mer
2604-2619
0.001
2
RP11-380J14.1
hsa-miR-125b-5p
0.839
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000412427
Biotype: lincRNA
Gene id: ENSG00000204362
Gene Name: RP11-380J14.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
Fibroblasts Foreskin Normal/Primary
- Kidney Normal/Primary
- Placenta Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4472-4481
0.020
2
7mer
4209-4231
0.006
0
6mer
4570-4587
0.003
2
6mer
439-460
0.003
1
7mer
509-526
0.003
1
6mer
1837-1856
0.001
2
6mer
1361-1384
0.001
1
6mer
2800-2816
0.001
1
RP11-106D4.2
hsa-miR-125b-5p
0.838
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000612833
Biotype: sense_intronic
Gene id: ENSG00000276337
Gene Name: RP11-106D4.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
3310-3337
0.023
1
8mer
2809-2823
0.014
0
6mer
1332-1354
0.001
1
CNTN4-AS1
hsa-miR-125b-5p
0.838
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000442749
Biotype: antisense
Gene id: ENSG00000237990
Gene Name: CNTN4-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1010-1029
0.035
8
6mer
1362-1375
0.003
3
RP11-19O2.2
hsa-miR-125b-5p
0.838
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000509037
Biotype: antisense
Gene id: ENSG00000250448
Gene Name: RP11-19O2.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
76-102
0.038
1
RP11-42I10.1
hsa-miR-125b-5p
0.838
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000564212
Biotype: lincRNA
Gene id: ENSG00000260086
Gene Name: RP11-42I10.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
145-167
0.038
2
RP5-1142A6.8
hsa-miR-125b-5p
0.838
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000567588
Biotype: antisense
Gene id: ENSG00000182376
Gene Name: RP5-1142A6.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1487-1502
0.012
1
8mer
644-666
0.011
1
6mer
1355-1382
0.003
0
7mer
725-750
0.003
0
6mer
324-348
0.003
2
6mer
1565-1590
0.003
2
6mer
1706-1732
0.002
1
6mer
1046-1071
0.001
Not Conserved
RP11-477N3.1
hsa-miR-125b-5p
0.838
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000606436
Biotype: lincRNA
Gene id: ENSG00000272156
Gene Name: RP11-477N3.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
502-526
0.038
1
MAMDC2-AS1
hsa-miR-125b-5p
0.838
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000590177
Biotype: antisense
Gene id: ENSG00000204706
Gene Name: MAMDC2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
903-929
0.038
1
TTN-AS1
hsa-miR-125b-5p
0.838
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000587944
Biotype: antisense
Gene id: ENSG00000237298
Gene Name: TTN-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
845-869
0.038
4
RP11-37C7.2
hsa-miR-125b-5p
0.837
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000559899
Biotype: sense_intronic
Gene id: ENSG00000259432
Gene Name: RP11-37C7.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
96-112
0.037
1
RP11-478K15.6
hsa-miR-125b-5p
0.837
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000421190
Biotype: lincRNA
Gene id: ENSG00000230731
Gene Name: RP11-478K15.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1290-1310
0.022
5
7mer
688-696
0.014
2
6mer
623-628
0.002
1
ACVR2B-AS1
hsa-miR-125b-5p
0.836
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000441531
Biotype: antisense
Gene id: ENSG00000229589
Gene Name: ACVR2B-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1952-1976
0.031
4
7mer
1770-1794
0.005
0
7mer
1323-1350
0.002
0
RP11-150O12.3
hsa-miR-125b-5p
0.836
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000519691
Biotype: lincRNA
Gene id: ENSG00000254290
Gene Name: RP11-150O12.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
593-615
0.021
1
6mer
1775-1779
0.006
5
6mer
166-187
0.003
1
6mer
257-264
0.003
0
6mer
779-789
0.002
1
6mer
1704-1721
0.002
1
6mer
906-924
0.001
Not Conserved
NPHP3-ACAD11
hsa-miR-125b-5p
0.835
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: NR_037804.1
Biotype: sense
Gene id: NR_037804.1 (gene)
Gene Name: NPHP3-ACAD11
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3105-3131
0.021
1
7mer
7075-7094
0.011
8
6mer
2365-2383
0.002
5
6mer
5153-5157
0.002
6
6mer
2983-3006
0.001
4
RP11-421E14.2
hsa-miR-125b-5p
0.835
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000581917
Biotype: sense_intronic
Gene id: ENSG00000264895
Gene Name: RP11-421E14.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
866-883
0.026
0
8mer
1059-1074
0.011
1
RP11-574K11.29
hsa-miR-125b-5p
0.835
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000415917
Biotype: lincRNA
Gene id: ENSG00000272140
Gene Name: RP11-574K11.29
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
641-658
0.037
1
RP11-669N7.3
hsa-miR-125b-5p
0.834
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000542578
Biotype: lincRNA
Gene id: ENSG00000256699
Gene Name: RP11-669N7.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
990-1008
0.037
0
RP11-1007I13.4
hsa-miR-125b-5p
0.834
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000583636
Biotype: processed_transcript
Gene id: ENSG00000266560
Gene Name: RP11-1007I13.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
690-711
0.031
1
8mer
348-365
0.006
0
XLOC_002795
hsa-miR-125b-5p
0.833
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006199
Biotype: transcript isomorph
Gene id: XLOC_002795
Gene Name: XLOC_002795
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
185-209
0.037
2
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