LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-125b-5p


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Gene
miRNA
Score
DIANA Links
HECW1-IT1
hsa-miR-125b-5p
0.849
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000322220
Biotype: sense_intronic
Gene id: ENSG00000181211
Gene Name: HECW1-IT1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
303-316
0.031
5
6mer
111-127
0.004
1
6mer
356-373
0.003
4
XLOC_006469
hsa-miR-125b-5p
0.849
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00014311
Biotype: transcript isomorph
Gene id: XLOC_006469
Gene Name: XLOC_006469
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
28-46
0.039
1
RP11-458K10.1
hsa-miR-125b-5p
0.848
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000471672
Biotype: lincRNA
Gene id: ENSG00000242072
Gene Name: RP11-458K10.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
260-267
0.039
0
LINC01475
hsa-miR-125b-5p
0.848
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000548010
Biotype: lincRNA
Gene id: ENSG00000257582
Gene Name: LINC01475
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
565-572
0.039
3
AC018866.1
hsa-miR-125b-5p
0.847
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000421820
Biotype: lincRNA
Gene id: ENSG00000229774
Gene Name: AC018866.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
351-367
0.034
0
6mer
313-336
0.005
1
RP11-616M22.7
hsa-miR-125b-5p
0.847
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000561649
Biotype: lincRNA
Gene id: ENSG00000260710
Gene Name: RP11-616M22.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
54-78
0.039
1
XLOC_012427
hsa-miR-125b-5p
0.846
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025599
Biotype: transcript isomorph
Gene id: XLOC_012427
Gene Name: XLOC_012427
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
769-794
0.037
0
6mer
2007-2028
0.002
Not Conserved
RP11-146F11.1
hsa-miR-125b-5p
0.846
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000568500
Biotype: antisense
Gene id: ENSG00000261840
Gene Name: RP11-146F11.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
827-850
0.032
6
7mer
1022-1037
0.006
3
SHANK3
hsa-miR-125b-5p
0.846
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000414786
Biotype: processed_transcript
Gene id: ENSG00000251322
Gene Name: SHANK3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4178-4202
0.017
11
7mer
1248-1269
0.011
10
7mer
4449-4476
0.008
11
6mer
1143-1155
0.001
Not Conserved
6mer
4063-4080
0.001
1
6mer
5606-5632
0.001
3
XLOC_010743
hsa-miR-125b-5p
0.846
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00022133
Biotype: transcript isomorph
Gene id: XLOC_010743
Gene Name: XLOC_010743
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1439-1461
0.021
1
8mer
2498-2516
0.007
1
8mer+mismatch
4993-5015
0.003
1
7mer
3867-3882
0.002
1
6mer
630-657
0.002
1
6mer
2133-2155
0.002
3
6mer
6575-6593
0.001
0
6mer
5606-5621
0.001
0
RP11-696D21.2
hsa-miR-125b-5p
0.846
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000557475
Biotype: lincRNA
Gene id: ENSG00000258943
Gene Name: RP11-696D21.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
825-844
0.036
4
6mer
194-216
0.002
1
RP11-758H9.2
hsa-miR-125b-5p
0.846
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000611877
Biotype: lincRNA
Gene id: ENSG00000273702
Gene Name: RP11-758H9.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
801-807
0.039
4
RP11-12M5.4
hsa-miR-125b-5p
0.845
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000442108
Biotype: lincRNA
Gene id: ENSG00000231966
Gene Name: RP11-12M5.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
135-161
0.038
1
RP11-78F17.1
hsa-miR-125b-5p
0.845
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000583497
Biotype: lincRNA
Gene id: ENSG00000263551
Gene Name: RP11-78F17.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
34-40
0.038
2
RP11-415C15.3
hsa-miR-125b-5p
0.845
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000513616
Biotype: lincRNA
Gene id: ENSG00000251325
Gene Name: RP11-415C15.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Lymph Node Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
482-501
0.038
1
RP11-105N14.3
hsa-miR-125b-5p
0.844
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000426870
Biotype: lincRNA
Gene id: ENSG00000236193
Gene Name: RP11-105N14.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
236-252
0.033
1
6mer
396-414
0.006
5
CTD-2245F17.3
hsa-miR-125b-5p
0.842
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000597550
Biotype: lincRNA
Gene id: ENSG00000269051
Gene Name: CTD-2245F17.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
364-385
0.020
0
7mer
379-402
0.011
2
6mer
198-217
0.004
1
6mer
451-471
0.004
2
SLX1B-SULT1A4
hsa-miR-125b-5p
0.841
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: NR_037609.1
Biotype: sense
Gene id: NR_037609.1 (gene)
Gene Name: SLX1B-SULT1A4
UCSC graphic: -
Expression:
  Cell Line Tissue Category
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
20-36
0.026
0
8mer
289-309
0.007
0
7mer
1172-1196
0.003
1
6mer
262-285
0.002
1
TTN-AS1
hsa-miR-125b-5p
0.841
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000589355
Biotype: antisense
Gene id: ENSG00000237298
Gene Name: TTN-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
365-389
0.038
4
RP11-85O21.2
hsa-miR-125b-5p
0.840
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000453529
Biotype: antisense
Gene id: ENSG00000236668
Gene Name: RP11-85O21.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1333-1356
0.013
1
6mer
190-194
0.009
5
6mer
1810-1828
0.008
9
6mer
1673-1696
0.003
5
6mer
868-890
0.002
1
6mer
1169-1184
0.002
4
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