LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-125b-5p


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Gene
miRNA
Score
DIANA Links
XLOC_008337
hsa-miR-125b-5p
0.856
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018082
Biotype: transcript isomorph
Gene id: XLOC_008337
Gene Name: XLOC_008337
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
93-118
0.040
1
XLOC_002543
hsa-miR-125b-5p
0.856
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004629
Biotype: transcript isomorph
Gene id: XLOC_002543
Gene Name: XLOC_002543
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Skeletal Muscle Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3040-3059
0.022
0
8mer
2660-2680
0.006
Not Conserved
7mer
2351-2369
0.005
1
6mer
133-152
0.004
Not Conserved
6mer
658-668
0.003
1
CTD-2308G16.1
hsa-miR-125b-5p
0.856
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000558994
Biotype: sense_intronic
Gene id: ENSG00000259377
Gene Name: CTD-2308G16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
191-213
0.040
1
XLOC_012006
hsa-miR-125b-5p
0.855
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024726
Biotype: transcript isomorph
Gene id: XLOC_012006
Gene Name: XLOC_012006
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
944-966
0.040
1
RP5-944M2.3
hsa-miR-125b-5p
0.855
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000545767
Biotype: lincRNA
Gene id: ENSG00000214043
Gene Name: RP5-944M2.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1400-1416
0.040
1
XLOC_004699
hsa-miR-125b-5p
0.855
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010231
Biotype: transcript isomorph
Gene id: XLOC_004699
Gene Name: XLOC_004699
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
40-63
0.040
1
RP5-991G20.2
hsa-miR-125b-5p
0.854
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000624370
Biotype: antisense
Gene id: ENSG00000259209
Gene Name: RP5-991G20.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
835-853
0.035
4
6mer
582-600
0.004
3
RP11-352D13.5
hsa-miR-125b-5p
0.854
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000558454
Biotype: lincRNA
Gene id: ENSG00000259504
Gene Name: RP11-352D13.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
274-298
0.037
1
6mer
235-247
0.003
1
XLOC_003794
hsa-miR-125b-5p
0.853
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008347
Biotype: transcript isomorph
Gene id: XLOC_003794
Gene Name: XLOC_003794
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
915-934
0.021
2
7mer
651-663
0.018
0
XLOC_013779
hsa-miR-125b-5p
0.853
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028429
Biotype: transcript isomorph
Gene id: XLOC_013779
Gene Name: XLOC_013779
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
3064-3080
0.005
1
7mer
349-373
0.004
Not Conserved
6mer
2654-2679
0.002
1
8mer
1525-1544
0.002
Not Conserved
6mer
71-96
0.002
Not Conserved
6mer
2801-2826
0.002
0
6mer
163-188
0.002
Not Conserved
6mer
511-534
0.002
Not Conserved
6mer
2505-2530
0.002
1
6mer
670-695
0.001
Not Conserved
6mer
2456-2481
0.001
1
6mer
1917-1942
0.001
1
6mer
2554-2579
0.001
0
6mer
2605-2630
0.001
0
6mer
2211-2236
0.001
1
6mer
1966-1989
0.001
1
6mer
2015-2040
0.001
1
7mer
1672-1699
0.001
Not Conserved
6mer
1329-1354
0.001
0
6mer
1476-1501
0.001
0
6mer
2113-2138
0.001
0
6mer
2357-2382
0.001
Not Conserved
6mer
1378-1403
0.001
Not Conserved
6mer
2064-2089
0.001
0
6mer
1868-1893
0.000
0
6mer
2260-2287
0.000
Not Conserved
6mer
1769-1794
0.000
Not Conserved
6mer
1623-1648
0.000
Not Conserved
XLOC_012382
hsa-miR-125b-5p
0.853
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025133
Biotype: transcript isomorph
Gene id: XLOC_012382
Gene Name: XLOC_012382
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2786-2808
0.039
1
XLOC_013010
hsa-miR-125b-5p
0.853
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00026952
Biotype: transcript isomorph
Gene id: XLOC_013010
Gene Name: XLOC_013010
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
935-951
0.039
0
XLOC_005406
hsa-miR-125b-5p
0.852
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011907
Biotype: transcript isomorph
Gene id: XLOC_005406
Gene Name: XLOC_005406
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
102-117
0.039
0
AC004840.9
hsa-miR-125b-5p
0.852
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000313156
Biotype: lincRNA
Gene id: ENSG00000175873
Gene Name: AC004840.9
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1426-1453
0.035
0
7mer
716-733
0.003
0
6mer
1293-1314
0.001
0
XLOC_007536
hsa-miR-125b-5p
0.851
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016675
Biotype: transcript isomorph
Gene id: XLOC_007536
Gene Name: XLOC_007536
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
951-968
0.033
1
6mer
187-205
0.003
0
6mer
760-782
0.003
1
XLOC_013968
hsa-miR-125b-5p
0.851
mTTBlnEmP

Gene Details
Chromosome: chr21
Transcript: TCONS_00029050
Biotype: transcript isomorph
Gene id: XLOC_013968
Gene Name: XLOC_013968
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
147-160
0.033
0
6mer
1560-1585
0.003
1
7mer
224-239
0.002
1
6mer
1179-1200
0.001
0
RP11-44M6.7
hsa-miR-125b-5p
0.851
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000485071
Biotype: retained_intron
Gene id: ENSG00000274272
Gene Name: RP11-44M6.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
46-71
0.021
0
8mer
103-116
0.011
0
7mer
3769-3786
0.002
Not Conserved
6mer
3671-3693
0.001
6
6mer
3607-3621
0.001
2
6mer
3927-3944
0.001
0
6mer
1025-1047
0.001
0
LINC00421
hsa-miR-125b-5p
0.851
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000413833
Biotype: lincRNA
Gene id: ENSG00000236834
Gene Name: LINC00421
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
648-664
0.027
0
6mer
182-201
0.012
0
XLOC_010290
hsa-miR-125b-5p
0.850
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021468
Biotype: transcript isomorph
Gene id: XLOC_010290
Gene Name: XLOC_010290
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
648-664
0.027
0
6mer
182-201
0.012
0
RP11-401P9.4
hsa-miR-125b-5p
0.850
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000563424
Biotype: lincRNA
Gene id: ENSG00000261685
Gene Name: RP11-401P9.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
390-405
0.034
9
6mer
1156-1169
0.002
1
6mer
695-716
0.001
1
6mer
2088-2108
0.001
Not Conserved
6mer
1693-1719
0.001
1
6mer
1788-1812
0.001
1
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