LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-125b-5p


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Gene
miRNA
Score
DIANA Links
PAX8-AS1
hsa-miR-125b-5p
0.861
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000422956
Biotype: antisense
Gene id: ENSG00000189223
Gene Name: PAX8-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2918-2937
0.006
1
8mer
3191-3214
0.005
2
7mer
10708-10732
0.005
0
6mer
118-132
0.003
Not Conserved
8mer
8545-8566
0.003
0
6mer
8931-8954
0.003
6
7mer
9113-9125
0.003
0
7mer
1440-1466
0.003
0
6mer
252-276
0.003
1
6mer
11471-11498
0.002
1
6mer
4212-4235
0.001
1
6mer
6472-6498
0.001
2
6mer
6072-6093
0.001
0
6mer
7264-7289
0.001
Not Conserved
6mer
2745-2764
0.001
1
XLOC_002841
hsa-miR-125b-5p
0.861
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006248
Biotype: transcript isomorph
Gene id: XLOC_002841
Gene Name: XLOC_002841
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
416-437
0.040
1
XLOC_011603
hsa-miR-125b-5p
0.860
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023825
Biotype: transcript isomorph
Gene id: XLOC_011603
Gene Name: XLOC_011603
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1886-1903
0.025
1
7mer
2299-2315
0.015
2
C1orf132
hsa-miR-125b-5p
0.860
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000608023
Biotype: lincRNA
Gene id: ENSG00000203709
Gene Name: C1orf132
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
14796-14821
0.006
1
7mer
1062-1085
0.006
3
8mer
2872-2890
0.005
1
7mer
11076-11101
0.003
3
7mer
11175-11200
0.003
1
7mer
13684-13704
0.002
0
6mer
3794-3811
0.002
3
7mer
5393-5404
0.001
Not Conserved
7mer
4954-4969
0.001
1
6mer
3391-3407
0.001
3
6mer
11939-11963
0.001
3
6mer
11444-11469
0.001
0
6mer
10509-10529
0.001
1
6mer
5537-5561
0.001
1
6mer
10914-10935
0.001
1
6mer
7103-7120
0.001
0
8mer
10479-10496
0.001
1
6mer
9109-9127
0.001
1
6mer
6987-7013
0.001
1
PTOV1-AS1
hsa-miR-125b-5p
0.860
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000600742
Biotype: antisense
Gene id: ENSG00000268006
Gene Name: PTOV1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
360-387
0.030
2
7mer
2954-2973
0.009
0
6mer
3106-3125
0.002
1
KDM4A-AS1
hsa-miR-125b-5p
0.859
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000453015
Biotype: antisense
Gene id: ENSG00000236200
Gene Name: KDM4A-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
149-176
0.040
2
AC007966.1
hsa-miR-125b-5p
0.859
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_110214.1
Biotype: antisense
Gene id: NR_110214.1 (gene)
Gene Name: AC007966.1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
783-801
0.040
0
XLOC_003281
hsa-miR-125b-5p
0.858
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006680
Biotype: transcript isomorph
Gene id: XLOC_003281
Gene Name: XLOC_003281
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
781-803
0.022
0
9mer
887-910
0.018
0
RP11-285G1.2
hsa-miR-125b-5p
0.858
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000436877
Biotype: antisense
Gene id: ENSG00000234504
Gene Name: RP11-285G1.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1294-1317
0.028
1
7mer
1315-1335
0.006
0
6mer
204-213
0.004
1
6mer
773-797
0.002
2
PSMG3-AS1
hsa-miR-125b-5p
0.858
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000437621
Biotype: lincRNA
Gene id: ENSG00000230487
Gene Name: PSMG3-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5413-5432
0.015
0
7mer
5451-5462
0.007
0
8mer
3478-3503
0.006
Not Conserved
7mer
852-873
0.004
1
6mer
5331-5355
0.002
1
6mer
4513-4531
0.002
0
7mer
3029-3055
0.001
0
6mer
2097-2121
0.001
1
6mer
3636-3650
0.001
1
6mer
3942-3962
0.001
0
6mer
3948-3973
0.000
1
AC018866.1
hsa-miR-125b-5p
0.858
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000444963
Biotype: lincRNA
Gene id: ENSG00000229774
Gene Name: AC018866.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
257-273
0.035
0
6mer
219-242
0.005
1
RP11-288L9.4
hsa-miR-125b-5p
0.857
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000430683
Biotype: antisense
Gene id: ENSG00000225886
Gene Name: RP11-288L9.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
437-451
0.040
0
RP11-77H9.2
hsa-miR-125b-5p
0.857
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000565934
Biotype: antisense
Gene id: ENSG00000260276
Gene Name: RP11-77H9.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
615-634
0.037
3
6mer
1976-2000
0.003
0
LINC00488
hsa-miR-125b-5p
0.857
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000494582
Biotype: lincRNA
Gene id: ENSG00000214381
Gene Name: LINC00488
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1025-1051
0.027
1
7mer
142-159
0.007
0
6mer
2436-2461
0.005
0
6mer
213-233
0.002
0
CTD-2144E22.8
hsa-miR-125b-5p
0.857
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000568121
Biotype: lincRNA
Gene id: ENSG00000260854
Gene Name: CTD-2144E22.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
109-128
0.040
1
FAM27L
hsa-miR-125b-5p
0.857
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000426869
Biotype: lincRNA
Gene id: ENSG00000178130
Gene Name: FAM27L
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
648-668
0.040
1
RP11-426C22.7
hsa-miR-125b-5p
0.857
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000620963
Biotype: lincRNA
Gene id: ENSG00000273582
Gene Name: RP11-426C22.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
224-237
0.032
1
7mer
97-122
0.008
0
XLOC_006786
hsa-miR-125b-5p
0.856
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014687
Biotype: transcript isomorph
Gene id: XLOC_006786
Gene Name: XLOC_006786
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
487-507
0.040
0
XLOC_013679
hsa-miR-125b-5p
0.856
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00027883
Biotype: transcript isomorph
Gene id: XLOC_013679
Gene Name: XLOC_013679
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
3902-3913
0.040
0
HOXA-AS2
hsa-miR-125b-5p
0.856
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000517641
Biotype: antisense
Gene id: ENSG00000253552
Gene Name: HOXA-AS2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
153-173
0.040
5
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