LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-125b-5p


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Gene
miRNA
Score
DIANA Links
ZBED3-AS1
hsa-miR-125b-5p
0.869
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000515356
Biotype: antisense
Gene id: ENSG00000250802
Gene Name: ZBED3-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
165-183
0.026
1
7mer
1436-1453
0.016
1
RP11-700H6.2
hsa-miR-125b-5p
0.869
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000506394
Biotype: lincRNA
Gene id: ENSG00000251665
Gene Name: RP11-700H6.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
56-75
0.042
1
XLOC_001671
hsa-miR-125b-5p
0.868
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003872
Biotype: transcript isomorph
Gene id: XLOC_001671
Gene Name: XLOC_001671
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
9496-9514
0.015
0
7mer
7001-7021
0.006
0
6mer
10214-10230
0.005
0
7mer
4202-4224
0.003
Not Conserved
7mer
7580-7597
0.002
Not Conserved
7mer
1341-1366
0.002
Not Conserved
6mer
9651-9672
0.002
0
6mer
844-858
0.002
Not Conserved
6mer
9070-9091
0.001
Not Conserved
6mer
7147-7168
0.001
0
6mer
3773-3787
0.001
Not Conserved
6mer
7324-7338
0.001
Not Conserved
6mer
2150-2169
0.001
Not Conserved
RP11-764K9.1
hsa-miR-125b-5p
0.868
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000417843
Biotype: lincRNA
Gene id: ENSG00000225411
Gene Name: RP11-764K9.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1480-1501
0.030
0
6mer
337-354
0.011
0
6mer
1350-1368
0.001
Not Conserved
LINC01330
hsa-miR-125b-5p
0.868
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000481578
Biotype: lincRNA
Gene id: ENSG00000244227
Gene Name: LINC01330
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1055-1079
0.014
1
7mer
742-763
0.012
Not Conserved
7mer
2196-2201
0.012
0
7mer
1340-1348
0.004
0
RP11-666A8.9
hsa-miR-125b-5p
0.868
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000588104
Biotype: antisense
Gene id: ENSG00000267078
Gene Name: RP11-666A8.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
118-144
0.033
1
8mer
788-800
0.007
1
6mer
434-455
0.001
1
RP5-845O24.8
hsa-miR-125b-5p
0.867
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000438401
Biotype: lincRNA
Gene id: ENSG00000228338
Gene Name: RP5-845O24.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
323-348
0.023
1
7mer
184-196
0.011
Not Conserved
7mer
342-369
0.007
Not Conserved
RP11-95O2.1
hsa-miR-125b-5p
0.867
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000589715
Biotype: lincRNA
Gene id: ENSG00000267651
Gene Name: RP11-95O2.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1673-1694
0.032
2
7mer
2037-2058
0.007
1
6mer
1216-1240
0.003
1
XLOC_002335
hsa-miR-125b-5p
0.865
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003408
Biotype: transcript isomorph
Gene id: XLOC_002335
Gene Name: XLOC_002335
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
547-562
0.041
1
XLOC_001199
hsa-miR-125b-5p
0.865
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001815
Biotype: transcript isomorph
Gene id: XLOC_001199
Gene Name: XLOC_001199
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
904-925
0.020
1
7mer
52-65
0.010
3
6mer
471-496
0.004
3
6mer
2771-2775
0.002
0
6mer
2215-2236
0.002
3
6mer
1593-1598
0.001
1
6mer
1496-1517
0.001
4
6mer
3970-3993
0.001
1
6mer
897-907
0.000
0
RP11-104J23.1
hsa-miR-125b-5p
0.865
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000617328
Biotype: antisense
Gene id: ENSG00000275944
Gene Name: RP11-104J23.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1597-1619
0.021
0
7mer
1466-1488
0.017
0
XLOC_012922
hsa-miR-125b-5p
0.865
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00026870
Biotype: transcript isomorph
Gene id: XLOC_012922
Gene Name: XLOC_012922
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
212-238
0.040
1
6mer
63-83
0.001
Not Conserved
AP000472.2
hsa-miR-125b-5p
0.864
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000420255
Biotype: lincRNA
Gene id: ENSG00000233215
Gene Name: AP000472.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
318-330
0.041
0
RP11-855A2.3
hsa-miR-125b-5p
0.864
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000577385
Biotype: antisense
Gene id: ENSG00000266717
Gene Name: RP11-855A2.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
205-229
0.041
0
XLOC_008454
hsa-miR-125b-5p
0.863
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018162
Biotype: transcript isomorph
Gene id: XLOC_008454
Gene Name: XLOC_008454
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
484-509
0.026
1
7mer
186-205
0.015
1
LINC00846
hsa-miR-125b-5p
0.863
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000334165
Biotype: lincRNA
Gene id: ENSG00000186842
Gene Name: LINC00846
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
324-346
0.027
1
6mer
844-866
0.007
1
6mer
1369-1392
0.003
0
6mer
1187-1206
0.003
0
SHANK3
hsa-miR-125b-5p
0.862
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000262795
Biotype: processed_transcript
Gene id: ENSG00000251322
Gene Name: SHANK3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3990-4014
0.016
11
7mer
1021-1042
0.014
10
7mer
4261-4288
0.007
11
6mer
916-928
0.002
Not Conserved
6mer
3875-3892
0.001
1
6mer
5391-5417
0.001
3
RP11-768B22.2
hsa-miR-125b-5p
0.862
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000515789
Biotype: antisense
Gene id: ENSG00000248571
Gene Name: RP11-768B22.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1934-1951
0.026
1
7mer
334-355
0.007
0
6mer
131-135
0.004
0
6mer
925-951
0.003
2
6mer
990-1014
0.001
1
KIF9-AS1
hsa-miR-125b-5p
0.862
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: NR_033373.1
Biotype: antisense
Gene id: NR_033373.1 (gene)
Gene Name: KIF9-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2305-2321
0.019
0
8mer
596-612
0.016
3
6mer
2407-2423
0.004
1
7mer
541-555
0.003
0
CTB-47B11.3
hsa-miR-125b-5p
0.862
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000508443
Biotype: antisense
Gene id: ENSG00000248544
Gene Name: CTB-47B11.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
313-335
0.024
1
8mer
991-1011
0.011
1
6mer
676-693
0.003
1
6mer
849-864
0.003
2
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