LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-125b-5p


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Gene
miRNA
Score
DIANA Links
XLOC_004166
hsa-miR-125b-5p
0.875
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008650
Biotype: transcript isomorph
Gene id: XLOC_004166
Gene Name: XLOC_004166
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Liver Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3000-3012
0.015
1
7mer
1778-1798
0.014
8
7mer
2305-2313
0.009
2
7mer
2217-2238
0.003
0
6mer
293-314
0.002
Not Conserved
XLOC_005559
hsa-miR-125b-5p
0.875
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012631
Biotype: transcript isomorph
Gene id: XLOC_005559
Gene Name: XLOC_005559
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
795-818
0.033
1
6mer
314-335
0.003
1
7mer
2119-2140
0.002
0
8mer
1585-1600
0.002
0
6mer
3378-3404
0.002
1
XLOC_010261
hsa-miR-125b-5p
0.875
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020997
Biotype: transcript isomorph
Gene id: XLOC_010261
Gene Name: XLOC_010261
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
234-251
0.043
1
XLOC_007324
hsa-miR-125b-5p
0.875
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015947
Biotype: transcript isomorph
Gene id: XLOC_007324
Gene Name: XLOC_007324
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
- Colon Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1604-1630
0.036
0
6mer
122-145
0.007
0
RP11-386J22.3
hsa-miR-125b-5p
0.875
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000622201
Biotype: sense_intronic
Gene id: ENSG00000274421
Gene Name: RP11-386J22.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
400-421
0.042
1
XLOC_007710
hsa-miR-125b-5p
0.874
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015825
Biotype: transcript isomorph
Gene id: XLOC_007710
Gene Name: XLOC_007710
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
- Heart Normal/Primary
HREpiC Kidney Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1480-1501
0.031
0
6mer
337-354
0.011
0
6mer
1350-1368
0.001
Not Conserved
FAM66C
hsa-miR-125b-5p
0.874
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000541558
Biotype: antisense
Gene id: ENSG00000226711
Gene Name: FAM66C
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1250-1267
0.029
1
7mer
133-144
0.009
0
6mer
834-850
0.004
0
LOC284344
hsa-miR-125b-5p
0.874
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: NR_033888.1
Biotype: sense
Gene id: NR_033888.1 (gene)
Gene Name: LOC284344
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
237-254
0.042
1
RP11-407B7.1
hsa-miR-125b-5p
0.873
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000593326
Biotype: lincRNA
Gene id: ENSG00000230102
Gene Name: RP11-407B7.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
137-157
0.042
0
RP11-153N17.1
hsa-miR-125b-5p
0.873
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000441295
Biotype: lincRNA
Gene id: ENSG00000233960
Gene Name: RP11-153N17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
660-667
0.042
1
AC007966.1
hsa-miR-125b-5p
0.873
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000421998
Biotype: antisense
Gene id: ENSG00000226747
Gene Name: AC007966.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
783-801
0.042
0
RP11-349P19.1
hsa-miR-125b-5p
0.873
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000424274
Biotype: antisense
Gene id: ENSG00000232120
Gene Name: RP11-349P19.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
219-239
0.042
3
RP11-309H21.3
hsa-miR-125b-5p
0.872
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000563320
Biotype: lincRNA
Gene id: ENSG00000261642
Gene Name: RP11-309H21.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
400-419
0.032
0
6mer
2842-2864
0.010
0
RP5-944M2.3
hsa-miR-125b-5p
0.871
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000540774
Biotype: lincRNA
Gene id: ENSG00000214043
Gene Name: RP5-944M2.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1279-1295
0.042
1
RP11-314O13.1
hsa-miR-125b-5p
0.871
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000562231
Biotype: lincRNA
Gene id: ENSG00000260896
Gene Name: RP11-314O13.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
172-194
0.042
0
RP11-481J2.2
hsa-miR-125b-5p
0.871
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000567448
Biotype: lincRNA
Gene id: ENSG00000260186
Gene Name: RP11-481J2.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
712-738
0.022
2
8mer
505-525
0.017
0
6mer
196-216
0.003
0
CTD-2012K14.8
hsa-miR-125b-5p
0.870
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000613438
Biotype: antisense
Gene id: ENSG00000276075
Gene Name: CTD-2012K14.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
147-173
0.036
3
6mer
485-499
0.005
5
RP5-945I17.2
hsa-miR-125b-5p
0.870
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000527684
Biotype: lincRNA
Gene id: ENSG00000254669
Gene Name: RP5-945I17.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
102-119
0.042
0
FAM66C
hsa-miR-125b-5p
0.869
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000535567
Biotype: antisense
Gene id: ENSG00000226711
Gene Name: FAM66C
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
87-104
0.042
1
LINC01330
hsa-miR-125b-5p
0.869
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000459923
Biotype: lincRNA
Gene id: ENSG00000244227
Gene Name: LINC01330
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1377-1401
0.027
1
7mer
1064-1085
0.014
Not Conserved
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