LncBase Experimental v.2
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Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-125b-5p


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Gene
miRNA
Pr. score
DIANA Links
Methods
XIST
hsa-miR-125b-5p
0.657
mTTBlnPmP
IP

Gene Details
Chromosome: X
Transcript: ENST00000429829
Biotype: lincRNA
Gene id: ENSG00000229807
Gene Name: XIST
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary

miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment:hippuristanol
Location
Region
Method
Result
Validation Type
Source
X:73845785-73845813
exon
HITS-CLIP
DIRECT
LncBasev2
X:73841445-73841473
exon
HITS-CLIP
DIRECT
LncBasev2
X:73845484-73845512
exon
HITS-CLIP
DIRECT
LncBasev2
X:73845785-73845813
exon
HITS-CLIP
DIRECT
LncBasev2
X:73823189-73823217
exon
HITS-CLIP
DIRECT
LncBasev2
X:73843535-73843563
exon
HITS-CLIP
DIRECT
LncBasev2
X:73841445-73841473
exon
HITS-CLIP
DIRECT
LncBasev2
X:73845785-73845813
exon
HITS-CLIP
DIRECT
LncBasev2
X:73823189-73823217
exon
HITS-CLIP
DIRECT
LncBasev2
X:73845484-73845512
exon
HITS-CLIP
DIRECT
LncBasev2
X:73844904-73844932
exon
HITS-CLIP
DIRECT
LncBasev2
X:73846077-73846105
exon
HITS-CLIP
DIRECT
LncBasev2
X:73843535-73843563
exon
HITS-CLIP
DIRECT
LncBasev2
X:73844610-73844638
exon
HITS-CLIP
DIRECT
LncBasev2
X:73844379-73844407
exon
HITS-CLIP
DIRECT
LncBasev2
X:73846368-73846396
exon
HITS-CLIP
DIRECT
LncBasev2
X:73846368-73846396
exon
HITS-CLIP
DIRECT
LncBasev2
X:73851291-73851319
exon
HITS-CLIP
DIRECT
LncBasev2
X:73841445-73841473
exon
HITS-CLIP
DIRECT
LncBasev2
X:73844904-73844932
exon
HITS-CLIP
DIRECT
LncBasev2
X:73845484-73845512
exon
HITS-CLIP
DIRECT
LncBasev2
X:73846077-73846105
exon
HITS-CLIP
DIRECT
LncBasev2
X:73844904-73844932
exon
HITS-CLIP
DIRECT
LncBasev2
X:73845785-73845813
exon
HITS-CLIP
DIRECT
LncBasev2
X:73851291-73851319
exon
HITS-CLIP
DIRECT
LncBasev2
X:73846368-73846396
exon
HITS-CLIP
DIRECT
LncBasev2
X:73844379-73844407
exon
HITS-CLIP
DIRECT
LncBasev2
X:73843535-73843563
exon
HITS-CLIP
DIRECT
LncBasev2
X:73845484-73845512
exon
HITS-CLIP
DIRECT
LncBasev2
X:73841445-73841473
exon
HITS-CLIP
DIRECT
LncBasev2
X:73844610-73844638
exon
HITS-CLIP
DIRECT
LncBasev2
X:73851291-73851319
exon
HITS-CLIP
DIRECT
LncBasev2
X:73846368-73846396
exon
HITS-CLIP
DIRECT
LncBasev2
X:73845785-73845813
exon
HITS-CLIP
DIRECT
LncBasev2
X:73844904-73844932
exon
HITS-CLIP
DIRECT
LncBasev2
X:73842383-73842411
exon
HITS-CLIP
DIRECT
LncBasev2
X:73825730-73825758
exon
HITS-CLIP
DIRECT
LncBasev2
X:73842383-73842411
exon
HITS-CLIP
DIRECT
LncBasev2
X:73844610-73844638
exon
HITS-CLIP
DIRECT
LncBasev2
X:73844904-73844932
exon
HITS-CLIP
DIRECT
LncBasev2
X:73846368-73846396
exon
HITS-CLIP
DIRECT
LncBasev2
X:73846077-73846105
exon
HITS-CLIP
DIRECT
LncBasev2
X:73851291-73851319
exon
HITS-CLIP
DIRECT
LncBasev2
XLOC_000010
hsa-miR-125b-5p
0.458
mTTBlnPmP
IP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000796
Biotype: transcript isomorph
Gene id: XLOC_000010
Gene Name: XLOC_000010
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Prostate Normal/Primary
- Testes Normal/Primary

miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
chr1:905116-905144
exon
HITS-CLIP
DIRECT
LncBasev2
chr1:905116-905144
exon
HITS-CLIP
DIRECT
LncBasev2
XLOC_000647
hsa-miR-125b-5p
0.396
mTTBlnPmP
IP

Gene Details
Chromosome: chr1
Transcript: TCONS_00002272
Biotype: transcript isomorph
Gene id: XLOC_000647
Gene Name: XLOC_000647
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HREpiC Kidney Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary

miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Publication
Tissue
Cell Type
Methods
Pillai MM et al. 2014
Mammary Gland
BT474
IP
Tested Cell Line: BT474
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
chr1:247333805-247333833
exon
HITS-CLIP
DIRECT
LncBasev2
XLOC_000918
hsa-miR-125b-5p
0.495
mTTBlnPmP
IP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000020
Biotype: transcript isomorph
Gene id: XLOC_000918
Gene Name: XLOC_000918
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary

miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
chr1:93338791-93338819
exon
HITS-CLIP
DIRECT
LncBasev2
XLOC_000992
hsa-miR-125b-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001651
Biotype: transcript isomorph
Gene id: XLOC_000992
Gene Name: XLOC_000992
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary

miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Publication
Tissue
Cell Type
Methods
Haecker Irina et al. 2012
Bone Marrow
BCBL1
IP
Tested Cell Line: BCBL1
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
chr1:121743006-121743034
exon
HITS-CLIP
DIRECT
LncBasev2
XLOC_001181
hsa-miR-125b-5p
0.473
mTTBlnPmP
IP

Gene Details
Chromosome: chr1
Transcript: TCONS_00002573
Biotype: transcript isomorph
Gene id: XLOC_001181
Gene Name: XLOC_001181
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
- Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary

miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment:hippuristanol
Location
Region
Method
Result
Validation Type
Source
chr1:207806469-207806497
exon
HITS-CLIP
DIRECT
LncBasev2
XLOC_002366
hsa-miR-125b-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: chr2
Transcript: TCONS_00005257
Biotype: transcript isomorph
Gene id: XLOC_002366
Gene Name: XLOC_002366
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Prostate Normal/Primary
- Testes Normal/Primary

miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
chr2:156318299-156318327
exon
HITS-CLIP
DIRECT
LncBasev2
XLOC_002368
hsa-miR-125b-5p
0.444
mTTBlnPmP
IP

Gene Details
Chromosome: chr2
Transcript: TCONS_00005258
Biotype: transcript isomorph
Gene id: XLOC_002368
Gene Name: XLOC_002368
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary

miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
chr2:159933594-159933622
exon
HITS-CLIP
DIRECT
LncBasev2
XLOC_002620
hsa-miR-125b-5p
0.546
mTTBlnPmP
IP

Gene Details
Chromosome: chr3
Transcript: TCONS_00005995
Biotype: transcript isomorph
Gene id: XLOC_002620
Gene Name: XLOC_002620
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
LCLBACD3 - Normal/Primary

miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
chr3:39424059-39424087
exon
HITS-CLIP
DIRECT
LncBasev2
XLOC_003281
hsa-miR-125b-5p
0.858
mTTBlnPmP
IP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006680
Biotype: transcript isomorph
Gene id: XLOC_003281
Gene Name: XLOC_003281
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary

miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
chr3:150022571-150022599
exon
HITS-CLIP
DIRECT
LncBasev2
chr3:150022677-150022705
exon
HITS-CLIP
DIRECT
LncBasev2
XLOC_003769
hsa-miR-125b-5p
0.514
mTTBlnPmP
IP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008927
Biotype: transcript isomorph
Gene id: XLOC_003769
Gene Name: XLOC_003769
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary

miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
chr4:165499870-165499898
exon
HITS-CLIP
DIRECT
LncBasev2
XLOC_004725
hsa-miR-125b-5p
0.555
mTTBlnPmP
IP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009596
Biotype: transcript isomorph
Gene id: XLOC_004725
Gene Name: XLOC_004725
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary

miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment:emetine
Location
Region
Method
Result
Validation Type
Source
chr5:6706570-6706598
exon
HITS-CLIP
DIRECT
LncBasev2
XLOC_005087
hsa-miR-125b-5p
0.625
mTTBlnPmP
IP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010560
Biotype: transcript isomorph
Gene id: XLOC_005087
Gene Name: XLOC_005087
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Placenta Normal/Primary
- Thyroid Normal/Primary

miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
chr5:173709551-173709579
exon
HITS-CLIP
DIRECT
LncBasev2
XLOC_005208
hsa-miR-125b-5p
0.629
mTTBlnPmP
IP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011743
Biotype: transcript isomorph
Gene id: XLOC_005208
Gene Name: XLOC_005208
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary

miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
chr6:25999482-25999510
exon
HITS-CLIP
DIRECT
LncBasev2
XLOC_006529
hsa-miR-125b-5p
0.533
mTTBlnPmP
IP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013891
Biotype: transcript isomorph
Gene id: XLOC_006529
Gene Name: XLOC_006529
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary

miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment:hippuristanol
Location
Region
Method
Result
Validation Type
Source
chr7:96649019-96649047
exon
HITS-CLIP
DIRECT
LncBasev2
XLOC_007598
hsa-miR-125b-5p
0.549
mTTBlnPmP
IP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016208
Biotype: transcript isomorph
Gene id: XLOC_007598
Gene Name: XLOC_007598
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Heart Normal/Primary
- Testes Normal/Primary

miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
chr9:134483398-134483426
exon
HITS-CLIP
DIRECT
LncBasev2
XLOC_007690
hsa-miR-125b-5p
1.000
mTTBlnPmP
IP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015562
Biotype: transcript isomorph
Gene id: XLOC_007690
Gene Name: XLOC_007690
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary

miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
chr9:39809833-39809861
exon
HITS-CLIP
DIRECT
LncBasev2
XLOC_007866
hsa-miR-125b-5p
0.406
mTTBlnPmP
IP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016488
Biotype: transcript isomorph
Gene id: XLOC_007866
Gene Name: XLOC_007866
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary

miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Publication
Tissue
Cell Type
Methods
Whisnant Adam W et al. 2013
Cervix
TZMBL
IP
Tested Cell Line: TZMBL
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
chr9:129411602-129411630
exon
HITS-CLIP
DIRECT
LncBasev2
XLOC_008127
hsa-miR-125b-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: chrX
Transcript: TCONS_00017300
Biotype: transcript isomorph
Gene id: XLOC_008127
Gene Name: XLOC_008127
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary

miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
chrX:20318059-20318087
exon
HITS-CLIP
DIRECT
LncBasev2
XLOC_009595
hsa-miR-125b-5p
0.382
mTTBlnPmP
IP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019794
Biotype: transcript isomorph
Gene id: XLOC_009595
Gene Name: XLOC_009595
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Ovary Normal/Primary

miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
chr11:125939338-125939366
exon
HITS-CLIP
DIRECT
LncBasev2
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