LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-125a-5p


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Gene
miRNA
Score
DIANA Links
RP11-276H7.2
hsa-miR-125a-5p
0.973
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000424774
Biotype: antisense
Gene id: ENSG00000227959
Gene Name: RP11-276H7.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HREpiC Kidney Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
129-153
0.066
2
6mer
56-81
0.003
1
CNTFR-AS1
hsa-miR-125a-5p
0.973
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000438244
Biotype: antisense
Gene id: ENSG00000237159
Gene Name: CNTFR-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
205-232
0.058
2
7mer
304-318
0.005
2
6mer
434-454
0.004
2
6mer
95-121
0.003
1
ERC2-IT1
hsa-miR-125a-5p
0.971
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: NR_024615.1
Biotype: sense
Gene id: NR_024615.1 (gene)
Gene Name: ERC2-IT1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1967-1988
0.062
0
6mer
594-598
0.004
1
6mer
1481-1506
0.001
1
LINC01396
hsa-miR-125a-5p
0.971
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000609099
Biotype: lincRNA
Gene id: ENSG00000273396
Gene Name: LINC01396
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
384-408
0.068
0
AP001046.6
hsa-miR-125a-5p
0.970
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000435702
Biotype: lincRNA
Gene id: ENSG00000225637
Gene Name: AP001046.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
70-95
0.034
Not Conserved
8mer
1683-1702
0.017
1
8mer+wobble
2441-2466
0.012
1
7mer
1354-1376
0.002
0
6mer
2633-2650
0.002
0
XLOC_012462
hsa-miR-125a-5p
0.969
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025629
Biotype: transcript isomorph
Gene id: XLOC_012462
Gene Name: XLOC_012462
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
543-566
0.055
1
6mer
251-275
0.006
6
6mer
815-839
0.003
0
6mer
398-425
0.003
1
XLOC_007865
hsa-miR-125a-5p
0.968
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016487
Biotype: transcript isomorph
Gene id: XLOC_007865
Gene Name: XLOC_007865
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
345-369
0.052
2
7mer
488-494
0.006
0
6mer
363-386
0.005
2
7mer
792-817
0.004
0
RP11-83A24.2
hsa-miR-125a-5p
0.968
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000608661
Biotype: antisense
Gene id: ENSG00000273247
Gene Name: RP11-83A24.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2078-2085
0.066
2
RP11-96L14.7
hsa-miR-125a-5p
0.968
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000414762
Biotype: antisense
Gene id: ENSG00000236782
Gene Name: RP11-96L14.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
326-352
0.066
5
LINC00960
hsa-miR-125a-5p
0.967
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000492922
Biotype: lincRNA
Gene id: ENSG00000242516
Gene Name: LINC00960
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1633-1653
0.025
0
7mer
158-169
0.021
0
7mer
460-478
0.020
0
RP3-395M20.7
hsa-miR-125a-5p
0.966
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000456687
Biotype: antisense
Gene id: ENSG00000225931
Gene Name: RP3-395M20.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
38-60
0.029
1
8mer
1071-1098
0.014
0
6mer
1071-1090
0.009
1
7mer
383-409
0.006
0
6mer
158-184
0.005
0
6mer
371-396
0.004
0
LINC00680
hsa-miR-125a-5p
0.966
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000422882
Biotype: lincRNA
Gene id: ENSG00000215190
Gene Name: LINC00680
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
324-345
0.054
0
6mer
380-399
0.011
0
RP11-104J23.2
hsa-miR-125a-5p
0.966
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000617747
Biotype: lincRNA
Gene id: ENSG00000278690
Gene Name: RP11-104J23.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
131-146
0.039
1
7mer
52-77
0.027
0
RP11-438B23.2
hsa-miR-125a-5p
0.966
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000566293
Biotype: sense_overlapping
Gene id: ENSG00000260412
Gene Name: RP11-438B23.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
963-970
0.053
9
7mer
3291-3313
0.008
3
6mer
2054-2081
0.002
Not Conserved
6mer
2425-2438
0.002
3
6mer
3568-3592
0.001
Not Conserved
RP1-309I22.2
hsa-miR-125a-5p
0.965
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624184
Biotype: sense_overlapping
Gene id: ENSG00000279338
Gene Name: RP1-309I22.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
592-613
0.016
1
8mer
11088-11106
0.011
1
8mer
2687-2706
0.009
0
8mer
1043-1057
0.005
0
6mer
28248-28271
0.003
4
6mer
5890-5908
0.002
4
6mer
19892-19909
0.002
0
6mer
14621-14644
0.002
4
6mer
16462-16466
0.002
4
7mer
4927-4949
0.002
0
7mer
4659-4676
0.001
2
7mer
12446-12470
0.001
Not Conserved
6mer
17861-17873
0.001
2
6mer
21600-21625
0.001
1
6mer
6870-6897
0.001
1
6mer
10756-10767
0.001
2
6mer
12578-12588
0.001
1
6mer
13836-13854
0.001
0
6mer
2356-2380
0.001
0
6mer
4604-4626
0.001
Not Conserved
6mer
3375-3394
0.001
1
6mer
4802-4827
0.001
0
LINC01350
hsa-miR-125a-5p
0.962
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000608417
Biotype: lincRNA
Gene id: ENSG00000228309
Gene Name: LINC01350
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
545-562
0.064
1
RP11-443N24.4
hsa-miR-125a-5p
0.961
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000544399
Biotype: lincRNA
Gene id: ENSG00000256256
Gene Name: RP11-443N24.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
218-239
0.036
1
7mer
24-30
0.027
3
AC004158.3
hsa-miR-125a-5p
0.960
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000564508
Biotype: lincRNA
Gene id: ENSG00000260664
Gene Name: AC004158.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
648-673
0.049
8
7mer
1407-1426
0.005
3
6mer
3939-3959
0.004
5
6mer
1179-1196
0.003
10
6mer
3234-3251
0.001
0
RP1-67A8.3
hsa-miR-125a-5p
0.959
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000441532
Biotype: antisense
Gene id: ENSG00000234206
Gene Name: RP1-67A8.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
282-296
0.062
2
LCMT1-AS2
hsa-miR-125a-5p
0.959
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000562280
Biotype: antisense
Gene id: ENSG00000260034
Gene Name: LCMT1-AS2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
11-33
0.043
1
8mer
558-564
0.020
0
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