LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-125a-5p


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Gene
miRNA
Score
DIANA Links
RP11-90L20.2
hsa-miR-125a-5p
0.702
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000429443
Biotype: antisense
Gene id: ENSG00000235121
Gene Name: RP11-90L20.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
420-443
0.012
0
7mer
1771-1795
0.008
0
6mer
1012-1031
0.002
2
6mer
1320-1346
0.002
1
C12orf80
hsa-miR-125a-5p
0.702
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000551332
Biotype: lincRNA
Gene id: ENSG00000257137
Gene Name: C12orf80
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
531-550
0.021
5
6mer
137-142
0.004
2
RP11-60L3.1
hsa-miR-125a-5p
0.701
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000561332
Biotype: antisense
Gene id: ENSG00000259264
Gene Name: RP11-60L3.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
248-271
0.023
1
6mer
159-183
0.002
1
XLOC_006568
hsa-miR-125a-5p
0.700
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00012923
Biotype: transcript isomorph
Gene id: XLOC_006568
Gene Name: XLOC_006568
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
463-484
0.025
5
RP1-128O3.4
hsa-miR-125a-5p
0.700
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000419801
Biotype: lincRNA
Gene id: ENSG00000230248
Gene Name: RP1-128O3.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
349-367
0.019
2
6mer
577-601
0.006
2
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