LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-125a-5p


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Gene
miRNA
Score
DIANA Links
RP11-661A12.9
hsa-miR-125a-5p
0.706
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000531730
Biotype: antisense
Gene id: ENSG00000255050
Gene Name: RP11-661A12.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
349-371
0.013
7
7mer
335-354
0.005
2
6mer
378-404
0.003
3
6mer
821-847
0.002
4
6mer
658-684
0.002
1
MIAT
hsa-miR-125a-5p
0.706
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000616469
Biotype: lincRNA
Gene id: ENSG00000225783
Gene Name: MIAT
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4306-4312
0.010
1
6mer
9287-9305
0.002
0
6mer
7276-7303
0.002
1
7mer
6730-6754
0.002
0
6mer
3297-3303
0.001
1
6mer
8552-8572
0.001
0
6mer
1431-1458
0.001
3
6mer
6081-6104
0.001
2
6mer
1566-1591
0.001
2
6mer
8264-8286
0.001
0
6mer
3535-3548
0.001
3
6mer
7904-7927
0.000
0
6mer
3399-3420
0.000
0
AL035610.1
hsa-miR-125a-5p
0.706
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000609782
Biotype: retained_intron
Gene id: ENSG00000232079
Gene Name: AL035610.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
211-234
0.025
Not Conserved
XLOC_005664
hsa-miR-125a-5p
0.706
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012134
Biotype: transcript isomorph
Gene id: XLOC_005664
Gene Name: XLOC_005664
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
80-93
0.025
0
RP11-498C9.3
hsa-miR-125a-5p
0.706
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000576554
Biotype: antisense
Gene id: ENSG00000262413
Gene Name: RP11-498C9.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
151-167
0.013
4
6mer
26-41
0.007
5
6mer
316-338
0.004
1
6mer
405-429
0.002
2
XLOC_014251
hsa-miR-125a-5p
0.706
mTTBlnEmP

Gene Details
Chromosome: chr22
Transcript: TCONS_00029427
Biotype: transcript isomorph
Gene id: XLOC_014251
Gene Name: XLOC_014251
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
530-537
0.025
4
XLOC_006688
hsa-miR-125a-5p
0.705
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014578
Biotype: transcript isomorph
Gene id: XLOC_006688
Gene Name: XLOC_006688
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
605-629
0.025
Not Conserved
LINC01024
hsa-miR-125a-5p
0.705
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000518790
Biotype: antisense
Gene id: ENSG00000245146
Gene Name: LINC01024
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
404-428
0.025
2
XLOC_008338
hsa-miR-125a-5p
0.705
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00017666
Biotype: transcript isomorph
Gene id: XLOC_008338
Gene Name: XLOC_008338
UCSC graphic: -
Expression:
  Cell Line Tissue Category
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1233-1258
0.006
1
6mer
2315-2319
0.005
1
6mer
513-538
0.003
1
7mer
1315-1342
0.003
0
6mer
684-709
0.003
1
7mer
1283-1300
0.002
0
6mer
1568-1589
0.002
0
MEG3
hsa-miR-125a-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: NR_046470.2
Biotype: lincRNA
Gene id: NR_046470.2 (gene)
Gene Name: MEG3
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
104-125
0.018
1
7mer
1143-1157
0.005
1
6mer
915-936
0.002
1
RP11-156L14.1
hsa-miR-125a-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000577270
Biotype: antisense
Gene id: ENSG00000265702
Gene Name: RP11-156L14.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1169-1189
0.023
7
6mer
2429-2456
0.002
1
KCNQ5-AS1
hsa-miR-125a-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000429832
Biotype: antisense
Gene id: ENSG00000229154
Gene Name: KCNQ5-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
584-596
0.025
1
RP11-181G12.4
hsa-miR-125a-5p
0.703
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000442483
Biotype: lincRNA
Gene id: ENSG00000234396
Gene Name: RP11-181G12.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
97-123
0.025
3
AC096772.6
hsa-miR-125a-5p
0.703
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000343987
Biotype: lincRNA
Gene id: ENSG00000244567
Gene Name: AC096772.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
943-949
0.025
6
RP11-15B24.5
hsa-miR-125a-5p
0.703
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000591117
Biotype: lincRNA
Gene id: ENSG00000228430
Gene Name: RP11-15B24.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
548-565
0.021
5
6mer
118-139
0.004
1
MEG3
hsa-miR-125a-5p
0.703
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000519709
Biotype: lincRNA
Gene id: ENSG00000214548
Gene Name: MEG3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
78-99
0.019
1
7mer
1098-1112
0.005
1
MEG3
hsa-miR-125a-5p
0.703
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000412736
Biotype: lincRNA
Gene id: ENSG00000214548
Gene Name: MEG3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
64-85
0.020
1
7mer
1052-1066
0.005
1
LINC00261
hsa-miR-125a-5p
0.702
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000564492
Biotype: lincRNA
Gene id: ENSG00000259974
Gene Name: LINC00261
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
A549 Lung Cancer/Malignant
- Prostate Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4295-4319
0.014
0
7mer
1039-1058
0.008
1
6mer
1750-1773
0.002
7
6mer
1237-1259
0.001
1
RP11-626I20.3
hsa-miR-125a-5p
0.702
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000550185
Biotype: lincRNA
Gene id: ENSG00000257762
Gene Name: RP11-626I20.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2750-2776
0.015
0
7mer
2510-2516
0.010
1
MEG3
hsa-miR-125a-5p
0.702
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000554639
Biotype: lincRNA
Gene id: ENSG00000214548
Gene Name: MEG3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
80-101
0.019
1
7mer
1100-1114
0.005
1
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