LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-125a-5p


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Gene
miRNA
Score
DIANA Links
MEG3
hsa-miR-125a-5p
0.710
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000455286
Biotype: lincRNA
Gene id: ENSG00000214548
Gene Name: MEG3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
111-132
0.025
1
RP11-428G5.5
hsa-miR-125a-5p
0.710
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000535163
Biotype: lincRNA
Gene id: ENSG00000255760
Gene Name: RP11-428G5.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
730-740
0.025
1
RP11-390F4.3
hsa-miR-125a-5p
0.710
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000615168
Biotype: lincRNA
Gene id: ENSG00000225489
Gene Name: RP11-390F4.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
210-231
0.021
0
7mer
501-512
0.003
0
6mer
647-668
0.001
0
RP3-439F8.1
hsa-miR-125a-5p
0.709
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000426112
Biotype: antisense
Gene id: ENSG00000234869
Gene Name: RP3-439F8.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
948-973
0.007
1
6mer
293-320
0.004
1
6mer
2652-2678
0.004
1
7mer
810-832
0.004
0
7mer
1558-1583
0.002
0
6mer
2222-2246
0.002
1
6mer
2557-2578
0.002
0
6mer
1777-1795
0.001
2
RP11-91P24.6
hsa-miR-125a-5p
0.709
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000530972
Biotype: antisense
Gene id: ENSG00000255449
Gene Name: RP11-91P24.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
625-649
0.025
1
RP11-292D4.3
hsa-miR-125a-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000565538
Biotype: lincRNA
Gene id: ENSG00000260090
Gene Name: RP11-292D4.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3054-3080
0.023
4
6mer
2538-2549
0.002
1
RP11-425M5.7
hsa-miR-125a-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000620327
Biotype: sense_intronic
Gene id: ENSG00000276603
Gene Name: RP11-425M5.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
322-349
0.025
5
LINC00599
hsa-miR-125a-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000521863
Biotype: lincRNA
Gene id: ENSG00000253230
Gene Name: LINC00599
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
13-40
0.025
1
RP11-407B7.1
hsa-miR-125a-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000598535
Biotype: lincRNA
Gene id: ENSG00000230102
Gene Name: RP11-407B7.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
36-62
0.018
0
6mer
523-547
0.007
3
PLCB2-AS1
hsa-miR-125a-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000559520
Biotype: antisense
Gene id: ENSG00000259307
Gene Name: PLCB2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
63-82
0.020
0
7mer
484-510
0.005
0
MIAT
hsa-miR-125a-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000620145
Biotype: lincRNA
Gene id: ENSG00000225783
Gene Name: MIAT
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4306-4312
0.010
1
6mer
9287-9305
0.002
0
6mer
7276-7303
0.002
1
7mer
6730-6754
0.002
0
6mer
1305-1332
0.001
3
6mer
3297-3303
0.001
1
6mer
8552-8572
0.001
0
6mer
6081-6104
0.001
2
6mer
1440-1465
0.001
2
6mer
8264-8286
0.001
0
6mer
3535-3548
0.001
3
6mer
7904-7927
0.000
0
6mer
3399-3420
0.000
0
AC098617.1
hsa-miR-125a-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000595918
Biotype: antisense
Gene id: ENSG00000233766
Gene Name: AC098617.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
225-246
0.018
0
7mer
680-707
0.007
1
TEX41
hsa-miR-125a-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000598659
Biotype: lincRNA
Gene id: ENSG00000226674
Gene Name: TEX41
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
123-143
0.015
0
7mer
565-585
0.011
2
CASC2
hsa-miR-125a-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000426021
Biotype: antisense
Gene id: ENSG00000177640
Gene Name: CASC2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2462-2481
0.015
1
6mer
2875-2900
0.005
3
6mer
2590-2613
0.003
0
6mer
2320-2340
0.002
1
CFLAR-AS1
hsa-miR-125a-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000601974
Biotype: antisense
Gene id: ENSG00000226312
Gene Name: CFLAR-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
399-416
0.025
1
RP11-44F14.8
hsa-miR-125a-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000571340
Biotype: lincRNA
Gene id: ENSG00000262714
Gene Name: RP11-44F14.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1861-1887
0.025
0
MIAT
hsa-miR-125a-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000613780
Biotype: lincRNA
Gene id: ENSG00000225783
Gene Name: MIAT
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4380-4386
0.010
1
6mer
9361-9379
0.002
0
6mer
7350-7377
0.002
1
7mer
6804-6828
0.002
0
6mer
3371-3377
0.001
1
6mer
1379-1406
0.001
3
6mer
8626-8646
0.001
0
6mer
6155-6178
0.001
2
6mer
8338-8360
0.001
0
6mer
1514-1539
0.001
2
6mer
3609-3622
0.001
3
6mer
7978-8001
0.000
0
6mer
3473-3494
0.000
0
XLOC_006838
hsa-miR-125a-5p
0.707
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014754
Biotype: transcript isomorph
Gene id: XLOC_006838
Gene Name: XLOC_006838
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
158-184
0.025
0
XLOC_000738
hsa-miR-125a-5p
0.707
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000483
Biotype: transcript isomorph
Gene id: XLOC_000738
Gene Name: XLOC_000738
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Lymph Node Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
834-861
0.017
1
7mer
737-759
0.008
2
RP1-69D17.4
hsa-miR-125a-5p
0.707
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000430296
Biotype: lincRNA
Gene id: ENSG00000226149
Gene Name: RP1-69D17.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
478-500
0.025
1
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