LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-125a-5p


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Gene
miRNA
Score
DIANA Links
XLOC_009564
hsa-miR-125a-5p
0.714
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019770
Biotype: transcript isomorph
Gene id: XLOC_009564
Gene Name: XLOC_009564
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
64-86
0.026
6
XLOC_002746
hsa-miR-125a-5p
0.714
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006143
Biotype: transcript isomorph
Gene id: XLOC_002746
Gene Name: XLOC_002746
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
7413-7429
0.010
0
8mer
4549-4571
0.005
0
6mer
9550-9570
0.003
1
6mer
2665-2688
0.002
4
6mer
1588-1614
0.002
2
6mer
3944-3962
0.002
0
6mer
5962-5982
0.002
0
6mer
6006-6016
0.000
0
RP11-386G11.3
hsa-miR-125a-5p
0.713
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000549516
Biotype: antisense
Gene id: ENSG00000258283
Gene Name: RP11-386G11.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
127-152
0.026
4
XLOC_009663
hsa-miR-125a-5p
0.713
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00021065
Biotype: transcript isomorph
Gene id: XLOC_009663
Gene Name: XLOC_009663
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
207-233
0.026
1
RP11-571L19.8
hsa-miR-125a-5p
0.713
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000609071
Biotype: lincRNA
Gene id: ENSG00000272777
Gene Name: RP11-571L19.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
656-679
0.026
0
RP11-61I13.3
hsa-miR-125a-5p
0.713
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000607215
Biotype: antisense
Gene id: ENSG00000235033
Gene Name: RP11-61I13.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
107-129
0.011
2
6mer
2815-2834
0.004
0
7mer
1989-2006
0.003
3
6mer
455-469
0.003
3
6mer
435-460
0.003
3
6mer
1646-1656
0.001
0
6mer
1548-1574
0.001
0
ZBED3-AS1
hsa-miR-125a-5p
0.713
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000511547
Biotype: antisense
Gene id: ENSG00000250802
Gene Name: ZBED3-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
171-183
0.026
1
LINC01016
hsa-miR-125a-5p
0.713
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000506222
Biotype: lincRNA
Gene id: ENSG00000249346
Gene Name: LINC01016
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3092-3115
0.009
0
6mer
3078-3096
0.006
5
6mer
237-264
0.004
2
6mer
291-317
0.003
0
6mer
682-707
0.002
2
6mer
721-748
0.001
1
6mer
1736-1761
0.001
1
XLOC_011184
hsa-miR-125a-5p
0.713
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023883
Biotype: transcript isomorph
Gene id: XLOC_011184
Gene Name: XLOC_011184
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
52-58
0.022
1
6mer
364-382
0.004
1
RP11-141J13.5
hsa-miR-125a-5p
0.712
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000573270
Biotype: lincRNA
Gene id: ENSG00000261863
Gene Name: RP11-141J13.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1076-1085
0.021
0
7mer
1009-1032
0.004
Not Conserved
CTB-49A3.2
hsa-miR-125a-5p
0.712
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000509051
Biotype: antisense
Gene id: ENSG00000248245
Gene Name: CTB-49A3.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3-29
0.026
1
RP11-115D19.1
hsa-miR-125a-5p
0.712
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000513572
Biotype: antisense
Gene id: ENSG00000251095
Gene Name: RP11-115D19.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1434-1440
0.025
2
VWA8-AS1
hsa-miR-125a-5p
0.712
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000612345
Biotype: antisense
Gene id: ENSG00000278338
Gene Name: VWA8-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
345-361
0.020
1
6mer
357-380
0.005
1
XLOC_005243
hsa-miR-125a-5p
0.711
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011115
Biotype: transcript isomorph
Gene id: XLOC_005243
Gene Name: XLOC_005243
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Thyroid Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
355-369
0.004
3
6mer
5092-5111
0.003
0
6mer
222-246
0.002
1
7mer
4467-4491
0.002
0
7mer
3624-3646
0.002
Not Conserved
6mer
2710-2732
0.001
0
6mer
355-377
0.001
1
6mer
3002-3017
0.001
0
6mer
3388-3410
0.001
0
6mer
2120-2136
0.001
Not Conserved
6mer
3483-3489
0.001
0
6mer
2388-2404
0.001
1
6mer
2444-2470
0.001
1
6mer
2520-2536
0.001
0
6mer
2143-2169
0.001
0
6mer
3587-3606
0.001
0
6mer
2275-2301
0.000
0
6mer
2243-2268
0.000
0
6mer
2421-2437
0.000
0
6mer
2487-2503
0.000
0
6mer
2322-2338
0.000
0
6mer
2177-2202
0.000
0
6mer
2717-2741
0.000
0
6mer
3533-3557
0.000
0
6mer
3399-3424
0.000
0
RP11-184E9.1
hsa-miR-125a-5p
0.711
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000502100
Biotype: lincRNA
Gene id: ENSG00000245662
Gene Name: RP11-184E9.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
421-446
0.025
1
AC018816.3
hsa-miR-125a-5p
0.711
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000441894
Biotype: antisense
Gene id: ENSG00000235978
Gene Name: AC018816.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
134-155
0.025
4
CTB-176F20.3
hsa-miR-125a-5p
0.711
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000600671
Biotype: antisense
Gene id: ENSG00000267934
Gene Name: CTB-176F20.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4463-4488
0.022
0
6mer
1007-1032
0.003
0
XLOC_013786
hsa-miR-125a-5p
0.711
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028434
Biotype: transcript isomorph
Gene id: XLOC_013786
Gene Name: XLOC_013786
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
461-481
0.022
2
6mer
334-338
0.003
1
RP11-116D17.2
hsa-miR-125a-5p
0.711
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000546696
Biotype: lincRNA
Gene id: ENSG00000257519
Gene Name: RP11-116D17.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
426-441
0.025
1
XLOC_004475
hsa-miR-125a-5p
0.710
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010742
Biotype: transcript isomorph
Gene id: XLOC_004475
Gene Name: XLOC_004475
UCSC graphic: -
Expression:
  Cell Line Tissue Category
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
373-397
0.011
1
8mer
883-907
0.010
3
6mer
662-678
0.002
2
6mer
250-275
0.001
0
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