LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-125a-5p


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Gene
miRNA
Score
DIANA Links
C1RL-AS1
hsa-miR-125a-5p
0.719
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000541775
Biotype: antisense
Gene id: ENSG00000205885
Gene Name: C1RL-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
5120-5142
0.018
0
7mer
1404-1425
0.004
1
6mer
2482-2498
0.001
2
6mer
3835-3848
0.001
1
6mer
3143-3167
0.001
3
TRAF3IP2-AS1
hsa-miR-125a-5p
0.719
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000532226
Biotype: antisense
Gene id: ENSG00000231889
Gene Name: TRAF3IP2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1572-1582
0.026
3
AP001053.11
hsa-miR-125a-5p
0.719
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000400385
Biotype: antisense
Gene id: ENSG00000215458
Gene Name: AP001053.11
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3739-3763
0.008
1
8mer
4086-4105
0.007
0
8mer
3111-3134
0.007
1
8mer+wobble
3296-3322
0.002
Not Conserved
6mer
4542-4564
0.002
2
XLOC_011837
hsa-miR-125a-5p
0.719
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024918
Biotype: transcript isomorph
Gene id: XLOC_011837
Gene Name: XLOC_011837
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1117-1144
0.023
0
6mer
2168-2188
0.004
2
KB-1517D11.4
hsa-miR-125a-5p
0.719
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000605923
Biotype: antisense
Gene id: ENSG00000272321
Gene Name: KB-1517D11.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1679-1701
0.017
4
6mer
2496-2519
0.005
3
6mer
152-175
0.003
1
CTC-503K11.2
hsa-miR-125a-5p
0.719
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000507050
Biotype: antisense
Gene id: ENSG00000248203
Gene Name: CTC-503K11.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
260-266
0.026
5
SNAI3-AS1
hsa-miR-125a-5p
0.718
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000568633
Biotype: antisense
Gene id: ENSG00000260630
Gene Name: SNAI3-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
964-979
0.011
1
7mer
1994-2015
0.008
0
6mer
470-489
0.004
3
6mer
877-896
0.002
1
RP11-192H23.5
hsa-miR-125a-5p
0.717
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000585189
Biotype: antisense
Gene id: ENSG00000265168
Gene Name: RP11-192H23.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
249-273
0.019
7
6mer
40-56
0.005
4
6mer
91-114
0.002
0
AC018816.3
hsa-miR-125a-5p
0.717
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000465436
Biotype: antisense
Gene id: ENSG00000235978
Gene Name: AC018816.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
137-158
0.026
4
RP11-348J12.2
hsa-miR-125a-5p
0.717
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000444965
Biotype: antisense
Gene id: ENSG00000226425
Gene Name: RP11-348J12.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
357-364
0.022
2
6mer
177-203
0.003
0
RP11-685A21.1
hsa-miR-125a-5p
0.717
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000591900
Biotype: lincRNA
Gene id: ENSG00000267215
Gene Name: RP11-685A21.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
102-111
0.026
2
HOXB-AS3
hsa-miR-125a-5p
0.717
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000474324
Biotype: antisense
Gene id: ENSG00000233101
Gene Name: HOXB-AS3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
26-43
0.022
8
6mer
102-128
0.004
3
NUTM2B-AS1
hsa-miR-125a-5p
0.717
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000619625
Biotype: antisense
Gene id: ENSG00000225484
Gene Name: NUTM2B-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1392-1414
0.024
1
6mer
3802-3819
0.002
1
XLOC_007869
hsa-miR-125a-5p
0.716
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016492
Biotype: transcript isomorph
Gene id: XLOC_007869
Gene Name: XLOC_007869
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
73-80
0.026
1
CTD-3193O13.11
hsa-miR-125a-5p
0.716
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000597156
Biotype: lincRNA
Gene id: ENSG00000268120
Gene Name: CTD-3193O13.11
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
475-501
0.011
1
7mer
405-432
0.006
0
6mer
646-665
0.003
1
6mer
545-570
0.003
0
6mer
342-363
0.002
Not Conserved
XLOC_006793
hsa-miR-125a-5p
0.716
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014696
Biotype: transcript isomorph
Gene id: XLOC_006793
Gene Name: XLOC_006793
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
196-215
0.026
1
LINC01024
hsa-miR-125a-5p
0.716
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000521133
Biotype: antisense
Gene id: ENSG00000245146
Gene Name: LINC01024
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
384-408
0.026
2
RP11-390F4.3
hsa-miR-125a-5p
0.715
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000452643
Biotype: lincRNA
Gene id: ENSG00000225489
Gene Name: RP11-390F4.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
157-178
0.021
0
7mer
448-459
0.003
0
6mer
594-615
0.002
0
MIAT
hsa-miR-125a-5p
0.715
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000616213
Biotype: lincRNA
Gene id: ENSG00000225783
Gene Name: MIAT
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4180-4186
0.011
1
6mer
9161-9179
0.002
0
6mer
7150-7177
0.002
1
7mer
6604-6628
0.002
0
6mer
5955-5978
0.001
2
6mer
1305-1332
0.001
3
6mer
3171-3177
0.001
1
6mer
8426-8446
0.001
0
6mer
1440-1465
0.001
2
6mer
8138-8160
0.001
0
6mer
3409-3422
0.001
3
6mer
7778-7801
0.000
0
6mer
3273-3294
0.000
0
CTD-3195I5.3
hsa-miR-125a-5p
0.715
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000571741
Biotype: antisense
Gene id: ENSG00000262692
Gene Name: CTD-3195I5.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
86-108
0.026
2
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