LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-125a-5p


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Gene
miRNA
Score
DIANA Links
RP11-138P22.1
hsa-miR-125a-5p
0.723
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000581901
Biotype: antisense
Gene id: ENSG00000266527
Gene Name: RP11-138P22.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1347-1365
0.016
5
6mer
1773-1791
0.002
2
6mer
1816-1841
0.002
2
6mer
761-787
0.002
2
6mer
929-946
0.002
3
6mer
1176-1201
0.001
1
6mer
1464-1476
0.001
1
LINC01330
hsa-miR-125a-5p
0.723
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000496891
Biotype: lincRNA
Gene id: ENSG00000244227
Gene Name: LINC01330
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
327-348
0.023
Not Conserved
6mer
89-93
0.004
1
XLOC_011436
hsa-miR-125a-5p
0.723
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023638
Biotype: transcript isomorph
Gene id: XLOC_011436
Gene Name: XLOC_011436
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
321-326
0.026
5
MIR490
hsa-miR-125a-5p
0.722
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000425981
Biotype: antisense
Gene id: ENSG00000234352
Gene Name: MIR490
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
541-558
0.022
1
7mer
1317-1340
0.004
1
RP11-473O4.4
hsa-miR-125a-5p
0.722
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000521014
Biotype: lincRNA
Gene id: ENSG00000254263
Gene Name: RP11-473O4.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
323-349
0.026
1
OR2A1-AS1
hsa-miR-125a-5p
0.722
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000487102
Biotype: antisense
Gene id: ENSG00000244479
Gene Name: OR2A1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
729-753
0.026
3
XLOC_003438
hsa-miR-125a-5p
0.722
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00007969
Biotype: transcript isomorph
Gene id: XLOC_003438
Gene Name: XLOC_003438
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Lung Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
472-495
0.020
1
6mer
2549-2569
0.004
Not Conserved
6mer
2398-2419
0.002
0
TEX41
hsa-miR-125a-5p
0.722
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000597655
Biotype: lincRNA
Gene id: ENSG00000226674
Gene Name: TEX41
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
123-143
0.015
0
7mer
565-585
0.011
2
RP13-467H17.1
hsa-miR-125a-5p
0.721
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000569285
Biotype: antisense
Gene id: ENSG00000261693
Gene Name: RP13-467H17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1960-1981
0.015
0
7mer
1444-1458
0.008
1
6mer
994-1019
0.003
1
6mer
1014-1039
0.001
0
AC005154.6
hsa-miR-125a-5p
0.721
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000355837
Biotype: retained_intron
Gene id: ENSG00000196295
Gene Name: AC005154.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
10419-10443
0.008
0
7mer
873-878
0.007
1
8mer
2589-2596
0.004
0
6mer
5751-5773
0.002
0
6mer
7614-7639
0.001
1
6mer
2975-2993
0.001
2
6mer
1867-1889
0.001
1
7mer
10408-10425
0.001
1
6mer
2906-2932
0.001
1
CTD-2184D3.5
hsa-miR-125a-5p
0.721
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000558607
Biotype: antisense
Gene id: ENSG00000259712
Gene Name: CTD-2184D3.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
6-31
0.007
1
6mer
109-115
0.007
1
6mer
84-108
0.006
1
6mer
206-221
0.004
0
6mer
294-319
0.004
0
RP11-52J3.2
hsa-miR-125a-5p
0.721
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000457427
Biotype: antisense
Gene id: ENSG00000229502
Gene Name: RP11-52J3.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
312-328
0.020
1
7mer
400-423
0.006
1
AC062029.1
hsa-miR-125a-5p
0.721
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000606164
Biotype: antisense
Gene id: ENSG00000234028
Gene Name: AC062029.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2784-2807
0.017
0
7mer
2422-2428
0.009
1
CTD-3162L10.1
hsa-miR-125a-5p
0.720
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000600983
Biotype: lincRNA
Gene id: ENSG00000267053
Gene Name: CTD-3162L10.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1602-1627
0.014
1
6mer
248-273
0.006
1
7mer
1493-1519
0.005
0
6mer
772-795
0.002
0
RP11-66B24.4
hsa-miR-125a-5p
0.720
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000560068
Biotype: antisense
Gene id: ENSG00000259583
Gene Name: RP11-66B24.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
126-132
0.023
1
6mer
791-810
0.002
2
6mer
1566-1593
0.001
3
XLOC_009038
hsa-miR-125a-5p
0.720
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019202
Biotype: transcript isomorph
Gene id: XLOC_009038
Gene Name: XLOC_009038
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
686-713
0.018
1
6mer
9-30
0.004
1
6mer
143-168
0.003
1
6mer
206-219
0.002
0
LINC00837
hsa-miR-125a-5p
0.720
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000608061
Biotype: lincRNA
Gene id: ENSG00000235824
Gene Name: LINC00837
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
304-326
0.026
0
RP11-863P13.2
hsa-miR-125a-5p
0.720
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000568587
Biotype: lincRNA
Gene id: ENSG00000261816
Gene Name: RP11-863P13.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
224-237
0.021
1
7mer
97-122
0.005
0
RP3-510H16.3
hsa-miR-125a-5p
0.720
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000609073
Biotype: antisense
Gene id: ENSG00000273176
Gene Name: RP3-510H16.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
210-234
0.026
2
CTD-3162L10.1
hsa-miR-125a-5p
0.720
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000586340
Biotype: lincRNA
Gene id: ENSG00000267053
Gene Name: CTD-3162L10.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1602-1627
0.014
1
6mer
248-273
0.006
1
7mer
1493-1519
0.005
0
6mer
772-795
0.002
0
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