LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-125a-5p


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Gene
miRNA
Score
DIANA Links
RP11-419C23.1
hsa-miR-125a-5p
0.728
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000523411
Biotype: lincRNA
Gene id: ENSG00000254038
Gene Name: RP11-419C23.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
565-581
0.020
1
7mer
509-520
0.007
1
XLOC_001556
hsa-miR-125a-5p
0.727
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004835
Biotype: transcript isomorph
Gene id: XLOC_001556
Gene Name: XLOC_001556
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
25-46
0.027
3
LINC00961
hsa-miR-125a-5p
0.727
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000443779
Biotype: lincRNA
Gene id: ENSG00000235387
Gene Name: LINC00961
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
781-789
0.009
0
6mer
3-29
0.006
6
6mer
58-84
0.005
3
7mer
477-499
0.004
3
6mer
240-256
0.002
0
XLOC_010592
hsa-miR-125a-5p
0.727
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021992
Biotype: transcript isomorph
Gene id: XLOC_010592
Gene Name: XLOC_010592
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5244-5265
0.017
Not Conserved
8mer
3318-3339
0.006
Not Conserved
8mer+wobble
2783-2804
0.003
0
6mer
4590-4601
0.002
Not Conserved
RP11-488L18.8
hsa-miR-125a-5p
0.727
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000428687
Biotype: lincRNA
Gene id: ENSG00000232347
Gene Name: RP11-488L18.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
270-291
0.021
0
6mer
232-259
0.005
1
RP11-173L6.1
hsa-miR-125a-5p
0.727
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000581971
Biotype: lincRNA
Gene id: ENSG00000266460
Gene Name: RP11-173L6.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
550-560
0.027
1
TTN-AS1
hsa-miR-125a-5p
0.727
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000582847
Biotype: antisense
Gene id: ENSG00000237298
Gene Name: TTN-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
187-192
0.027
9
LL22NC03-102D1.18
hsa-miR-125a-5p
0.727
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000438185
Biotype: lincRNA
Gene id: ENSG00000223999
Gene Name: LL22NC03-102D1.18
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
144-166
0.012
1
8mer
409-434
0.012
0
6mer
388-413
0.003
Not Conserved
RP5-1184F4.7
hsa-miR-125a-5p
0.727
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000620523
Biotype: antisense
Gene id: ENSG00000277301
Gene Name: RP5-1184F4.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1038-1064
0.027
2
RP11-618M23.4
hsa-miR-125a-5p
0.727
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000521016
Biotype: lincRNA
Gene id: ENSG00000253280
Gene Name: RP11-618M23.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
318-339
0.027
0
XLOC_010275
hsa-miR-125a-5p
0.727
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00021013
Biotype: transcript isomorph
Gene id: XLOC_010275
Gene Name: XLOC_010275
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
179-203
0.014
0
6mer
667-693
0.012
0
XLOC_014057
hsa-miR-125a-5p
0.727
mTTBlnEmP

Gene Details
Chromosome: chr21
Transcript: TCONS_00029275
Biotype: transcript isomorph
Gene id: XLOC_014057
Gene Name: XLOC_014057
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
231-253
0.027
1
PCBP1-AS1
hsa-miR-125a-5p
0.726
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000614826
Biotype: antisense
Gene id: ENSG00000179818
Gene Name: PCBP1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
313-335
0.027
0
XLOC_010392
hsa-miR-125a-5p
0.725
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021551
Biotype: transcript isomorph
Gene id: XLOC_010392
Gene Name: XLOC_010392
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
289-314
0.018
2
6mer
332-355
0.006
8
6mer
32-47
0.002
1
RP11-181E10.3
hsa-miR-125a-5p
0.725
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000603748
Biotype: lincRNA
Gene id: ENSG00000271590
Gene Name: RP11-181E10.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1206-1216
0.020
0
6mer
315-334
0.004
0
6mer
840-866
0.003
0
XLOC_007166
hsa-miR-125a-5p
0.724
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00015109
Biotype: transcript isomorph
Gene id: XLOC_007166
Gene Name: XLOC_007166
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4340-4366
0.009
0
7mer
375-401
0.009
Not Conserved
6mer
184-207
0.005
0
6mer
3546-3558
0.002
1
6mer
3209-3213
0.002
0
6mer
3063-3088
0.001
1
AC021218.2
hsa-miR-125a-5p
0.724
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000377722
Biotype: lincRNA
Gene id: ENSG00000204876
Gene Name: AC021218.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1767-1787
0.021
1
6mer
151-174
0.003
0
6mer
744-769
0.002
1
6mer
961-983
0.001
0
XLOC_003455
hsa-miR-125a-5p
0.724
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00007986
Biotype: transcript isomorph
Gene id: XLOC_003455
Gene Name: XLOC_003455
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
606-633
0.023
1
6mer
99-118
0.003
1
MEG3
hsa-miR-125a-5p
0.723
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000520714
Biotype: lincRNA
Gene id: ENSG00000214548
Gene Name: MEG3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
94-115
0.019
1
7mer
1117-1131
0.007
1
RP11-54O7.3
hsa-miR-125a-5p
0.723
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000609207
Biotype: retained_intron
Gene id: ENSG00000223764
Gene Name: RP11-54O7.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1310-1334
0.007
0
7mer
3284-3304
0.007
1
7mer
359-382
0.005
1
7mer
3670-3681
0.005
Not Conserved
6mer
3561-3582
0.001
1
6mer
930-956
0.001
1
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