LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-125a-5p


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Gene
miRNA
Score
DIANA Links
CTC-277H1.7
hsa-miR-125a-5p
0.732
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000573063
Biotype: retained_intron
Gene id: ENSG00000262691
Gene Name: CTC-277H1.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
731-753
0.010
1
7mer
2177-2203
0.010
1
6mer
489-508
0.004
1
6mer
34-52
0.003
1
RP11-356J5.13
hsa-miR-125a-5p
0.731
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000595053
Biotype: antisense
Gene id: ENSG00000268472
Gene Name: RP11-356J5.13
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
87-106
0.027
1
LINC00667
hsa-miR-125a-5p
0.731
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000582008
Biotype: lincRNA
Gene id: ENSG00000263753
Gene Name: LINC00667
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2265-2287
0.020
1
6mer
86-94
0.004
2
6mer
697-713
0.003
2
LINC01010
hsa-miR-125a-5p
0.731
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: NR_038216.1
Biotype: lincRNA
Gene id: NR_038216.1 (gene)
Gene Name: LINC01010
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1516-1541
0.016
5
6mer
1465-1486
0.005
4
6mer
960-978
0.003
3
6mer
297-318
0.003
1
RP11-221N13.3
hsa-miR-125a-5p
0.731
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000541391
Biotype: lincRNA
Gene id: ENSG00000256268
Gene Name: RP11-221N13.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
128-152
0.027
0
RP1-65J11.1
hsa-miR-125a-5p
0.731
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000438790
Biotype: lincRNA
Gene id: ENSG00000223382
Gene Name: RP1-65J11.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
136-159
0.025
2
6mer
41-64
0.002
1
AC018742.1
hsa-miR-125a-5p
0.731
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000435682
Biotype: lincRNA
Gene id: ENSG00000229621
Gene Name: AC018742.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1476-1499
0.021
1
6mer
1285-1305
0.003
2
6mer
714-720
0.003
0
RP11-371F15.3
hsa-miR-125a-5p
0.731
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000505607
Biotype: antisense
Gene id: ENSG00000250195
Gene Name: RP11-371F15.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
163-189
0.027
2
RP11-221N13.3
hsa-miR-125a-5p
0.730
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000539116
Biotype: lincRNA
Gene id: ENSG00000256268
Gene Name: RP11-221N13.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
137-161
0.027
0
AC079354.3
hsa-miR-125a-5p
0.730
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000409819
Biotype: antisense
Gene id: ENSG00000222035
Gene Name: AC079354.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
629-652
0.023
0
6mer
2537-2563
0.002
0
6mer
583-606
0.001
1
RP11-95I16.2
hsa-miR-125a-5p
0.729
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000414774
Biotype: lincRNA
Gene id: ENSG00000227307
Gene Name: RP11-95I16.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
859-879
0.027
0
RP11-93H12.4
hsa-miR-125a-5p
0.729
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000474115
Biotype: antisense
Gene id: ENSG00000270002
Gene Name: RP11-93H12.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2456-2481
0.016
0
6mer
2299-2319
0.007
5
7mer
502-515
0.002
1
6mer
637-660
0.001
1
RP11-260E18.1
hsa-miR-125a-5p
0.729
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000499131
Biotype: antisense
Gene id: ENSG00000246214
Gene Name: RP11-260E18.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
188-207
0.012
3
7mer
64-78
0.007
0
6mer
1614-1637
0.006
2
6mer
235-261
0.002
0
RP11-351M8.1
hsa-miR-125a-5p
0.729
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000561295
Biotype: antisense
Gene id: ENSG00000259649
Gene Name: RP11-351M8.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
413-439
0.025
1
6mer
315-337
0.002
0
FLG-AS1
hsa-miR-125a-5p
0.729
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000382265
Biotype: antisense
Gene id: ENSG00000237975
Gene Name: FLG-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
459-482
0.018
0
7mer
311-331
0.009
0
RP11-430C7.5
hsa-miR-125a-5p
0.729
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000444037
Biotype: lincRNA
Gene id: ENSG00000240219
Gene Name: RP11-430C7.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2066-2084
0.022
0
6mer
1710-1723
0.003
1
6mer
1096-1119
0.002
1
RP11-958F21.3
hsa-miR-125a-5p
0.729
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000578129
Biotype: lincRNA
Gene id: ENSG00000265552
Gene Name: RP11-958F21.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
153-178
0.027
1
LINC00961
hsa-miR-125a-5p
0.728
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: NR_024283.1
Biotype: lincRNA
Gene id: NR_024283.1 (gene)
Gene Name: LINC00961
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
781-789
0.009
0
6mer
3-29
0.006
6
6mer
58-84
0.005
3
7mer
477-499
0.004
3
6mer
240-256
0.002
0
RP11-110G21.1
hsa-miR-125a-5p
0.728
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000518942
Biotype: antisense
Gene id: ENSG00000228801
Gene Name: RP11-110G21.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
21-42
0.027
0
AC004112.4
hsa-miR-125a-5p
0.728
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000431064
Biotype: antisense
Gene id: ENSG00000226851
Gene Name: AC004112.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
314-335
0.022
1
6mer
445-467
0.003
1
6mer
462-482
0.002
0
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