Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-125a-5p

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Filters

Gene
miRNA
Score
CTA-796E4.5
hsa-miR-125a-5p
0.984

Gene Details
Chromosome: 22
Transcript: ENST00000624243
Biotype: lincRNA
Gene id: ENSG00000280065
Gene Name: CTA-796E4.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
24234-24254
0.022
1
8mer
28566-28582
0.006
0
7mer
6205-6217
0.005
1
6mer
31528-31555
0.004
2
7mer
9986-10008
0.004
0
6mer
604-625
0.003
1
7mer
2341-2363
0.002
1
7mer
6857-6877
0.002
1
6mer
17803-17823
0.002
3
7mer
12370-12391
0.002
0
6mer
25247-25273
0.002
1
6mer
25779-25805
0.002
2
6mer
27551-27557
0.002
1
6mer
26635-26661
0.002
1
6mer
6716-6736
0.002
1
6mer
28272-28296
0.002
0
6mer
15208-15235
0.001
2
6mer
7371-7395
0.001
1
6mer
8230-8249
0.001
0
6mer
19005-19025
0.001
1
6mer
23314-23318
0.001
0
6mer
19377-19394
0.001
0
6mer
10476-10492
0.001
1
6mer
14226-14252
0.001
1
6mer
12078-12098
0.001
0
6mer
3992-4000
0.001
2
6mer
18230-18250
0.001
1
6mer
28898-28921
0.001
1
6mer
29011-29032
0.001
1
6mer
7427-7450
0.001
0
6mer
12525-12549
0.001
0
6mer
5430-5453
0.000
0
6mer
28340-28362
0.000
Not Conserved
6mer
3991-4007
0.000
1
LINC00663
hsa-miR-125a-5p
0.984

Gene Details
Chromosome: 19
Transcript: ENST00000586885
Biotype: lincRNA
Gene id: ENSG00000266904
Gene Name: LINC00663
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1565-1572
0.059
1
7mer
2094-2119
0.010
0
6mer
2283-2306
0.006
1
6mer
2478-2498
0.003
0
CNTFR-AS1
hsa-miR-125a-5p
0.984

Gene Details
Chromosome: 9
Transcript: ENST00000436360
Biotype: antisense
Gene id: ENSG00000237159
Gene Name: CNTFR-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
639-666
0.061
2
7mer
738-752
0.006
2
6mer
277-296
0.004
2
6mer
868-888
0.004
2
6mer
95-121
0.003
1
FLG-AS1
hsa-miR-125a-5p
0.981

Gene Details
Chromosome: 1
Transcript: ENST00000445097
Biotype: antisense
Gene id: ENSG00000237975
Gene Name: FLG-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2094-2118
0.061
3
7mer
2417-2433
0.011
1
6mer
1982-1988
0.003
0
RP11-384P7.7
hsa-miR-125a-5p
0.981

Gene Details
Chromosome: 9
Transcript: ENST00000566968
Biotype: lincRNA
Gene id: ENSG00000260947
Gene Name: RP11-384P7.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3213-3235
0.032
1
8mer
601-621
0.029
1
7mer
1804-1828
0.007
1
6mer
347-373
0.007
2
SPTY2D1-AS1
hsa-miR-125a-5p
0.980

Gene Details
Chromosome: 11
Transcript: ENST00000542172
Biotype: retained_intron
Gene id: ENSG00000247595
Gene Name: SPTY2D1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
38-64
0.075
4
RP3-323A16.1
hsa-miR-125a-5p
0.980

Gene Details
Chromosome: 22
Transcript: ENST00000623959
Biotype: antisense
Gene id: ENSG00000279184
Gene Name: RP3-323A16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
21449-21455
0.024
2
8mer
17461-17482
0.007
1
7mer
4919-4945
0.004
0
7mer
17212-17232
0.003
2
8mer
47197-47216
0.003
0
7mer
44545-44568
0.002
4
6mer
35910-35930
0.002
2
6mer
1587-1613
0.002
2
7mer
30421-30442
0.002
1
6mer
45198-45224
0.002
2
6mer
43395-43413
0.001
Not Conserved
6mer
48382-48406
0.001
0
6mer
39869-39894
0.001
0
6mer
16111-16120
0.001
4
6mer
41997-42020
0.001
1
6mer
3372-3395
0.001
0
6mer
24123-24131
0.001
1
6mer
43101-43125
0.001
3
6mer
8786-8802
0.001
0
6mer
40678-40702
0.001
2
6mer
21186-21200
0.001
0
6mer
16813-16836
0.001
2
6mer
47475-47489
0.001
0
7mer
52018-52038
0.001
Not Conserved
6mer
11320-11343
0.001
0
6mer
39239-39258
0.001
1
6mer
51997-52013
0.001
1
6mer
52121-52142
0.001
1
6mer
47559-47583
0.001
1
6mer
44262-44279
0.001
3
6mer
36046-36067
0.001
1
6mer
1756-1774
0.000
Not Conserved
6mer
40947-40971
0.000
0
6mer
40820-40834
0.000
1
RP1-60O19.1
hsa-miR-125a-5p
0.979

Gene Details
Chromosome: 6
Transcript: ENST00000418134
Biotype: retained_intron
Gene id: ENSG00000235142
Gene Name: RP1-60O19.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
459-478
0.070
2
6mer
30-50
0.003
Not Conserved
XLOC_008883
hsa-miR-125a-5p
0.979

Gene Details
Chromosome: chr10
Transcript: TCONS_00018986
Biotype: transcript isomorph
Gene id: XLOC_008883
Gene Name: XLOC_008883
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
HepG2 Liver Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
247-273
0.046
1
8mer
512-539
0.028
1
RP11-382E9.1
hsa-miR-125a-5p
0.979

Gene Details
Chromosome: 1
Transcript: ENST00000452199
Biotype: lincRNA
Gene id: ENSG00000231718
Gene Name: RP11-382E9.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1898-1905
0.051
2
8mer
149-173
0.020
1
6mer
1014-1039
0.003
1
XLOC_001194
hsa-miR-125a-5p
0.979

Gene Details
Chromosome: chr1
Transcript: TCONS_00001807
Biotype: transcript isomorph
Gene id: XLOC_001194
Gene Name: XLOC_001194
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
38-57
0.074
0
XLOC_013274
hsa-miR-125a-5p
0.979

Gene Details
Chromosome: chr19
Transcript: TCONS_00027238
Biotype: transcript isomorph
Gene id: XLOC_013274
Gene Name: XLOC_013274
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4794-4808
0.066
1
6mer
6273-6291
0.005
0
8mer
2585-2611
0.002
Not Conserved
XLOC_013773
hsa-miR-125a-5p
0.979

Gene Details
Chromosome: chr20
Transcript: TCONS_00028422
Biotype: transcript isomorph
Gene id: XLOC_013773
Gene Name: XLOC_013773
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
74-93
0.012
1
7mer
477-501
0.010
1
8mer
2689-2710
0.006
0
8mer
5103-5125
0.006
Not Conserved
7mer
5733-5741
0.004
Not Conserved
6mer
5658-5683
0.003
0
6mer
269-292
0.003
0
6mer
5443-5464
0.003
Not Conserved
6mer
5296-5322
0.002
0
6mer
905-929
0.002
0
6mer
5345-5371
0.002
0
6mer
1277-1302
0.001
0
6mer
1115-1139
0.001
0
6mer
5247-5271
0.001
Not Conserved
6mer
4815-4841
0.001
0
6mer
4959-4985
0.001
Not Conserved
6mer
5198-5224
0.001
Not Conserved
6mer
4766-4792
0.001
0
6mer
2900-2925
0.001
0
6mer
3059-3083
0.001
0
6mer
4861-4887
0.001
Not Conserved
6mer
2193-2217
0.001
Not Conserved
6mer
4573-4599
0.001
Not Conserved
6mer
3354-3378
0.001
0
6mer
2034-2058
0.001
Not Conserved
6mer
4717-4744
0.001
Not Conserved
6mer
3757-3782
0.001
0
6mer
4048-4074
0.001
Not Conserved
6mer
3659-3683
0.001
0
6mer
4527-4553
0.001
Not Conserved
6mer
3855-3881
0.001
Not Conserved
6mer
4380-4406
0.000
Not Conserved
6mer
4478-4504
0.000
Not Conserved
6mer
4195-4221
0.000
Not Conserved
6mer
3610-3636
0.000
Not Conserved
6mer
3512-3538
0.000
Not Conserved
6mer
3561-3587
0.000
Not Conserved
6mer
4331-4355
0.000
Not Conserved
6mer
3999-4026
0.000
Not Conserved
6mer
3708-3728
0.000
Not Conserved
6mer
2640-2664
0.000
Not Conserved
6mer
3806-3832
0.000
Not Conserved
6mer
4244-4263
0.000
Not Conserved
6mer
2585-2608
0.000
Not Conserved
6mer
2528-2549
0.000
Not Conserved
RP4-671O14.7
hsa-miR-125a-5p
0.978

Gene Details
Chromosome: 22
Transcript: ENST00000624215
Biotype: antisense
Gene id: ENSG00000280011
Gene Name: RP4-671O14.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
16493-16516
0.011
1
8mer
14876-14903
0.010
1
8mer
13571-13592
0.008
1
7mer
1499-1515
0.008
2
7mer
865-880
0.008
2
8mer
10532-10558
0.004
Not Conserved
6mer
18200-18214
0.003
1
6mer
14426-14449
0.002
1
6mer
3777-3799
0.001
0
6mer
8948-8972
0.001
0
6mer
13774-13797
0.001
2
6mer
16207-16222
0.001
0
6mer
13416-13443
0.001
1
6mer
17484-17510
0.001
0
6mer
8090-8110
0.001
1
6mer
9748-9771
0.001
0
6mer
11516-11535
0.001
0
6mer
16130-16138
0.001
2
6mer
7156-7174
0.001
0
6mer
8863-8890
0.001
0
6mer
2221-2237
0.001
1
6mer
9330-9353
0.001
0
6mer
13270-13295
0.001
1
6mer
15726-15743
0.001
0
6mer
6289-6309
0.001
Not Conserved
6mer
16012-16027
0.001
0
6mer
7901-7926
0.001
Not Conserved
6mer
8017-8043
0.001
0
6mer
13217-13231
0.000
1
6mer
1462-1486
0.000
1
6mer
13554-13577
0.000
2
6mer
8933-8954
0.000
0
LOC100128885
hsa-miR-125a-5p
0.977

Gene Details
Chromosome: 7
Transcript: NR_077227.1
Biotype: lincRNA
Gene id: NR_077227.1 (gene)
Gene Name: LOC100128885
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
485-511
0.052
0
7mer
3442-3464
0.013
0
6mer
1015-1019
0.003
0
6mer
1828-1832
0.002
0
6mer
1899-1903
0.001
0
XLOC_000063
hsa-miR-125a-5p
0.977

Gene Details
Chromosome: chr1
Transcript: TCONS_00000848
Biotype: transcript isomorph
Gene id: XLOC_000063
Gene Name: XLOC_000063
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
33-39
0.064
1
6mer
303-326
0.008
1
RP11-455F5.6
hsa-miR-125a-5p
0.976

Gene Details
Chromosome: 16
Transcript: ENST00000610691
Biotype: antisense
Gene id: ENSG00000275371
Gene Name: RP11-455F5.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
517-538
0.071
4
CTD-2139B15.4
hsa-miR-125a-5p
0.976

Gene Details
Chromosome: 5
Transcript: ENST00000505158
Biotype: lincRNA
Gene id: ENSG00000250822
Gene Name: CTD-2139B15.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
426-447
0.065
5
7mer
2153-2171
0.003
0
6mer
829-841
0.003
0
AE000658.22
hsa-miR-125a-5p
0.975

Gene Details
Chromosome: 14
Transcript: ENST00000535893
Biotype: antisense
Gene id: ENSG00000257096
Gene Name: AE000658.22
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
352-374
0.060
7
6mer
414-436
0.007
1
6mer
221-245
0.004
5
CNTFR-AS1
hsa-miR-125a-5p
0.974

Gene Details
Chromosome: 9
Transcript: ENST00000453642
Biotype: antisense
Gene id: ENSG00000237159
Gene Name: CNTFR-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
310-337
0.059
2
7mer
409-423
0.005
2
6mer
539-559
0.004
2
6mer
95-121
0.003
1
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