LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-125a-5p


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Gene
miRNA
Score
DIANA Links
XLOC_005414
hsa-miR-125a-5p
0.736
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011913
Biotype: transcript isomorph
Gene id: XLOC_005414
Gene Name: XLOC_005414
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
354-368
0.015
1
7mer
3432-3438
0.012
1
XLOC_013026
hsa-miR-125a-5p
0.736
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00026974
Biotype: transcript isomorph
Gene id: XLOC_013026
Gene Name: XLOC_013026
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
625-644
0.023
2
6mer
136-154
0.004
1
RP11-474D1.3
hsa-miR-125a-5p
0.736
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000291374
Biotype: lincRNA
Gene id: ENSG00000214039
Gene Name: RP11-474D1.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2687-2710
0.011
1
7mer
2202-2228
0.006
0
6mer
514-539
0.004
1
6mer
1345-1372
0.002
Not Conserved
6mer
1127-1131
0.002
1
6mer
2583-2604
0.001
0
6mer
1568-1581
0.001
1
XLOC_007486
hsa-miR-125a-5p
0.735
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016660
Biotype: transcript isomorph
Gene id: XLOC_007486
Gene Name: XLOC_007486
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
61-66
0.012
0
7mer
1293-1319
0.011
3
6mer
75-101
0.005
4
RP11-714M23.2
hsa-miR-125a-5p
0.735
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000620778
Biotype: lincRNA
Gene id: ENSG00000277837
Gene Name: RP11-714M23.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2479-2500
0.022
2
7mer
3281-3297
0.002
0
7mer
2512-2529
0.002
1
6mer
384-402
0.001
1
6mer
3227-3240
0.001
2
CTC-439O9.3
hsa-miR-125a-5p
0.735
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000589511
Biotype: lincRNA
Gene id: ENSG00000267777
Gene Name: CTC-439O9.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
494-514
0.012
1
6mer
160-164
0.010
7
6mer
257-269
0.003
Not Conserved
6mer
461-481
0.003
1
RP11-3M1.1
hsa-miR-125a-5p
0.735
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000563906
Biotype: sense_overlapping
Gene id: ENSG00000261538
Gene Name: RP11-3M1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
226-244
0.021
1
6mer
341-350
0.007
4
XLOC_014129
hsa-miR-125a-5p
0.734
mTTBlnEmP

Gene Details
Chromosome: chr21
Transcript: TCONS_00029187
Biotype: transcript isomorph
Gene id: XLOC_014129
Gene Name: XLOC_014129
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
581-605
0.017
0
7mer
945-967
0.011
0
FAM66C
hsa-miR-125a-5p
0.734
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000454799
Biotype: antisense
Gene id: ENSG00000226711
Gene Name: FAM66C
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
58-73
0.014
0
7mer
193-204
0.010
0
6mer
896-910
0.004
0
LINC00898
hsa-miR-125a-5p
0.734
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000609786
Biotype: lincRNA
Gene id: ENSG00000205634
Gene Name: LINC00898
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1187-1205
0.020
1
8mer
1061-1082
0.008
Not Conserved
LINC00898
hsa-miR-125a-5p
0.734
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000610069
Biotype: lincRNA
Gene id: ENSG00000205634
Gene Name: LINC00898
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1053-1071
0.020
1
8mer
927-948
0.008
Not Conserved
XLOC_004419
hsa-miR-125a-5p
0.733
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010710
Biotype: transcript isomorph
Gene id: XLOC_004419
Gene Name: XLOC_004419
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
105-115
0.016
1
7mer
1720-1742
0.011
0
LINC01024
hsa-miR-125a-5p
0.733
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000523452
Biotype: antisense
Gene id: ENSG00000245146
Gene Name: LINC01024
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
443-467
0.023
2
6mer
514-530
0.004
5
WEE2-AS1
hsa-miR-125a-5p
0.733
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000495800
Biotype: antisense
Gene id: ENSG00000228775
Gene Name: WEE2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1053-1074
0.024
3
6mer
447-470
0.003
1
RP11-533E19.7
hsa-miR-125a-5p
0.733
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000610272
Biotype: lincRNA
Gene id: ENSG00000272906
Gene Name: RP11-533E19.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
782-802
0.027
9
XLOC_003260
hsa-miR-125a-5p
0.733
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00005831
Biotype: transcript isomorph
Gene id: XLOC_003260
Gene Name: XLOC_003260
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
123-146
0.017
2
7mer
360-365
0.006
0
6mer
512-533
0.002
1
6mer
621-647
0.002
0
AC004988.1
hsa-miR-125a-5p
0.733
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000415237
Biotype: antisense
Gene id: ENSG00000203446
Gene Name: AC004988.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
127-144
0.016
0
7mer
1153-1176
0.012
1
CTB-180A7.3
hsa-miR-125a-5p
0.732
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000595644
Biotype: antisense
Gene id: ENSG00000269802
Gene Name: CTB-180A7.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
139-165
0.027
1
RP5-1119O21.2
hsa-miR-125a-5p
0.732
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000413941
Biotype: lincRNA
Gene id: ENSG00000226861
Gene Name: RP5-1119O21.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
93-104
0.022
6
6mer
228-251
0.005
6
DKFZp434L192
hsa-miR-125a-5p
0.732
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_026929.1
Biotype: lincRNA
Gene id: NR_026929.1 (gene)
Gene Name: DKFZp434L192
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
415-427
0.022
0
7mer
575-597
0.005
0
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