LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-125a-5p


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Gene
miRNA
Score
DIANA Links
RP13-1032I1.7
hsa-miR-125a-5p
0.741
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000575312
Biotype: antisense
Gene id: ENSG00000262049
Gene Name: RP13-1032I1.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
470-487
0.021
1
8mer
1183-1195
0.003
0
6mer
132-155
0.002
0
6mer
377-400
0.001
1
MIRLET7BHG
hsa-miR-125a-5p
0.741
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000360737
Biotype: lincRNA
Gene id: ENSG00000197182
Gene Name: MIRLET7BHG
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+wobble
4331-4349
0.021
11
6mer
4126-4146
0.002
Not Conserved
8mer+mismatch
1064-1086
0.002
0
6mer
2296-2309
0.001
0
7mer
1178-1193
0.001
0
6mer
1159-1184
0.001
0
6mer
2624-2647
0.001
0
XLOC_000626
hsa-miR-125a-5p
0.740
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000071
Biotype: transcript isomorph
Gene id: XLOC_000626
Gene Name: XLOC_000626
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1492-1509
0.010
0
8mer
2886-2907
0.007
1
8mer
1572-1594
0.004
3
6mer
71-92
0.003
1
6mer
2747-2774
0.002
1
7mer
2891-2916
0.002
1
XLOC_010383
hsa-miR-125a-5p
0.739
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021785
Biotype: transcript isomorph
Gene id: XLOC_010383
Gene Name: XLOC_010383
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
- Ovary Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
563-584
0.028
Not Conserved
RP11-1078H9.6
hsa-miR-125a-5p
0.739
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000567837
Biotype: lincRNA
Gene id: ENSG00000259789
Gene Name: RP11-1078H9.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2255-2282
0.011
1
6mer
383-406
0.004
4
7mer
2134-2158
0.004
0
6mer
2524-2548
0.003
1
7mer
532-555
0.003
Not Conserved
6mer
1189-1215
0.002
3
RP11-944L7.4
hsa-miR-125a-5p
0.739
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000457331
Biotype: antisense
Gene id: ENSG00000236869
Gene Name: RP11-944L7.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
46-69
0.026
5
6mer
9-31
0.002
1
PRR7-AS1
hsa-miR-125a-5p
0.739
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000425316
Biotype: antisense
Gene id: ENSG00000246334
Gene Name: PRR7-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
554-577
0.018
1
7mer
258-283
0.009
1
RP11-905K4.1
hsa-miR-125a-5p
0.739
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000589074
Biotype: lincRNA
Gene id: ENSG00000267627
Gene Name: RP11-905K4.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
146-168
0.023
1
6mer
333-355
0.005
1
PRKG1-AS1
hsa-miR-125a-5p
0.738
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000426785
Biotype: antisense
Gene id: ENSG00000236671
Gene Name: PRKG1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
Fibroblasts Foreskin Normal/Primary
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
563-575
0.028
4
ALG9-IT1
hsa-miR-125a-5p
0.738
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000531305
Biotype: sense_intronic
Gene id: ENSG00000254450
Gene Name: ALG9-IT1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
468-486
0.028
1
RP11-311F12.1
hsa-miR-125a-5p
0.738
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000577087
Biotype: lincRNA
Gene id: ENSG00000262681
Gene Name: RP11-311F12.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
370-393
0.014
0
7mer
379-404
0.011
1
6mer
2075-2099
0.003
2
AC009411.2
hsa-miR-125a-5p
0.738
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000458359
Biotype: lincRNA
Gene id: ENSG00000235537
Gene Name: AC009411.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
53-75
0.020
1
7mer
82-103
0.008
1
XLOC_004644
hsa-miR-125a-5p
0.738
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010838
Biotype: transcript isomorph
Gene id: XLOC_004644
Gene Name: XLOC_004644
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
80-99
0.028
0
RP11-474D1.3
hsa-miR-125a-5p
0.737
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000567788
Biotype: lincRNA
Gene id: ENSG00000214039
Gene Name: RP11-474D1.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2687-2710
0.007
1
6mer
4511-4516
0.006
1
7mer
2202-2228
0.006
0
6mer
514-539
0.004
1
6mer
1345-1372
0.002
Not Conserved
6mer
1127-1131
0.002
1
6mer
1568-1581
0.001
1
6mer
2583-2604
0.001
0
NR2F1-AS1
hsa-miR-125a-5p
0.737
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000607831
Biotype: antisense
Gene id: ENSG00000237187
Gene Name: NR2F1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1932-1954
0.019
2
6mer
617-643
0.006
8
6mer
1484-1498
0.001
0
6mer
1121-1147
0.001
0
XLOC_003027
hsa-miR-125a-5p
0.737
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006403
Biotype: transcript isomorph
Gene id: XLOC_003027
Gene Name: XLOC_003027
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2488-2514
0.012
0
7mer
612-639
0.007
1
7mer
3405-3431
0.007
1
6mer
276-294
0.002
1
LINC00889
hsa-miR-125a-5p
0.737
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: NR_026935.1
Biotype: lincRNA
Gene id: NR_026935.1 (gene)
Gene Name: LINC00889
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1965-1985
0.026
1
6mer
1255-1263
0.002
0
RP11-462P6.1
hsa-miR-125a-5p
0.737
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000558245
Biotype: lincRNA
Gene id: ENSG00000259447
Gene Name: RP11-462P6.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
309-314
0.028
5
RP11-420A23.1
hsa-miR-125a-5p
0.736
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000511497
Biotype: lincRNA
Gene id: ENSG00000251432
Gene Name: RP11-420A23.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1831-1848
0.028
0
bP-21264C1.2
hsa-miR-125a-5p
0.736
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000622995
Biotype: lincRNA
Gene id: ENSG00000278932
Gene Name: bP-21264C1.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
91-116
0.027
0
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