LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-125a-5p


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Gene
miRNA
Score
DIANA Links
XLOC_007358
hsa-miR-125a-5p
0.752
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015672
Biotype: transcript isomorph
Gene id: XLOC_007358
Gene Name: XLOC_007358
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
420-427
0.029
0
RP11-268G12.3
hsa-miR-125a-5p
0.752
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000436019
Biotype: lincRNA
Gene id: ENSG00000242021
Gene Name: RP11-268G12.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
511-537
0.021
0
7mer
337-357
0.007
1
XLOC_012885
hsa-miR-125a-5p
0.752
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026566
Biotype: transcript isomorph
Gene id: XLOC_012885
Gene Name: XLOC_012885
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3737-3751
0.010
1
7mer
5021-5046
0.008
1
8mer
2134-2150
0.003
0
8mer
2714-2738
0.003
2
6mer
5003-5027
0.001
1
6mer
4164-4189
0.001
0
6mer
4292-4317
0.001
0
6mer
2739-2761
0.001
Not Conserved
LINC00838
hsa-miR-125a-5p
0.751
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000562956
Biotype: lincRNA
Gene id: ENSG00000261683
Gene Name: LINC00838
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
337-342
0.009
1
6mer
2870-2886
0.007
6
6mer
2752-2770
0.004
1
6mer
677-695
0.003
1
6mer
456-483
0.003
0
6mer
2557-2581
0.002
0
6mer
1741-1762
0.001
0
DLX6-AS1
hsa-miR-125a-5p
0.751
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000430404
Biotype: antisense
Gene id: ENSG00000231764
Gene Name: DLX6-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
255-272
0.022
1
6mer
154-180
0.004
1
6mer
118-140
0.003
0
RP11-66B24.7
hsa-miR-125a-5p
0.751
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000431060
Biotype: processed_transcript
Gene id: ENSG00000272808
Gene Name: RP11-66B24.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
4309-4333
0.017
1
8mer
4374-4390
0.006
0
6mer
1019-1023
0.003
4
6mer
4175-4195
0.001
0
6mer
3566-3588
0.001
1
6mer
1485-1510
0.001
4
XLOC_006391
hsa-miR-125a-5p
0.750
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013752
Biotype: transcript isomorph
Gene id: XLOC_006391
Gene Name: XLOC_006391
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
55-74
0.029
0
TRPM2-AS
hsa-miR-125a-5p
0.750
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000456880
Biotype: antisense
Gene id: ENSG00000230061
Gene Name: TRPM2-AS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1759-1784
0.024
1
6mer
1366-1389
0.004
1
APOC4-APOC2
hsa-miR-125a-5p
0.750
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: NR_037932.1
Biotype: sense
Gene id: NR_037932.1 (gene)
Gene Name: APOC4-APOC2
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1402-1424
0.029
1
RP11-253E3.3
hsa-miR-125a-5p
0.749
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000513358
Biotype: lincRNA
Gene id: ENSG00000250899
Gene Name: RP11-253E3.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
759-780
0.028
2
6mer
2254-2274
0.001
1
RP11-573D15.2
hsa-miR-125a-5p
0.749
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000419745
Biotype: lincRNA
Gene id: ENSG00000232233
Gene Name: RP11-573D15.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Testes Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1617-1642
0.017
1
7mer
262-283
0.008
Not Conserved
6mer
156-181
0.003
Not Conserved
LINC00950
hsa-miR-125a-5p
0.749
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: NR_024006.1
Biotype: lincRNA
Gene id: NR_024006.1 (gene)
Gene Name: LINC00950
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5056-5083
0.020
1
7mer
4698-4705
0.004
0
7mer
3362-3387
0.002
0
6mer
1657-1661
0.002
3
RP4-671O14.6
hsa-miR-125a-5p
0.749
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624919
Biotype: sense_overlapping
Gene id: ENSG00000280434
Gene Name: RP4-671O14.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4356-4375
0.006
0
8mer
9756-9780
0.005
0
7mer
7759-7783
0.003
2
6mer
771-795
0.002
Not Conserved
7mer
3744-3770
0.001
0
6mer
1056-1076
0.001
1
7mer
9639-9655
0.001
0
6mer
1624-1647
0.001
1
6mer
1981-1993
0.001
1
6mer
10054-10069
0.001
0
6mer
4213-4233
0.001
0
7mer
7996-8015
0.001
1
6mer
6015-6022
0.001
0
6mer
9070-9093
0.001
0
6mer
8312-8336
0.001
1
6mer
9614-9632
0.001
0
6mer
8134-8154
0.001
1
RP11-196O16.1
hsa-miR-125a-5p
0.749
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000609163
Biotype: lincRNA
Gene id: ENSG00000273477
Gene Name: RP11-196O16.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1552-1575
0.029
2
RP11-46C24.3
hsa-miR-125a-5p
0.747
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000378340
Biotype: lincRNA
Gene id: ENSG00000205015
Gene Name: RP11-46C24.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
249-264
0.011
0
8mer
894-917
0.008
0
7mer
270-289
0.006
2
6mer
273-299
0.002
1
7mer
598-616
0.001
Not Conserved
LINC00656
hsa-miR-125a-5p
0.747
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000443744
Biotype: lincRNA
Gene id: ENSG00000233746
Gene Name: LINC00656
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
- Lymph Node Normal/Primary
- Placenta Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1844-1869
0.017
1
8mer
1726-1748
0.011
1
XLOC_013685
hsa-miR-125a-5p
0.747
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028336
Biotype: transcript isomorph
Gene id: XLOC_013685
Gene Name: XLOC_013685
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
879-885
0.025
1
6mer
1648-1668
0.004
1
XLOC_009194
hsa-miR-125a-5p
0.747
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019370
Biotype: transcript isomorph
Gene id: XLOC_009194
Gene Name: XLOC_009194
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Liver Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1973-1994
0.024
0
6mer
98-117
0.004
2
6mer
955-970
0.001
1
RP11-515O17.3
hsa-miR-125a-5p
0.747
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000576751
Biotype: lincRNA
Gene id: ENSG00000262079
Gene Name: RP11-515O17.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1714-1739
0.018
0
6mer
41-66
0.005
0
6mer
1503-1529
0.004
1
6mer
1187-1210
0.001
0
AC005597.1
hsa-miR-125a-5p
0.747
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000588092
Biotype: antisense
Gene id: ENSG00000267223
Gene Name: AC005597.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
312-337
0.028
6
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