LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-125a-5p


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Gene
miRNA
Score
DIANA Links
AP000289.6
hsa-miR-125a-5p
0.756
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: NR_109961.1
Biotype: lincRNA
Gene id: NR_109961.1 (gene)
Gene Name: AP000289.6
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
330-336
0.025
1
6mer
635-656
0.004
2
XLOC_013356
hsa-miR-125a-5p
0.756
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027767
Biotype: transcript isomorph
Gene id: XLOC_013356
Gene Name: XLOC_013356
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
17-42
0.012
0
7mer
612-638
0.005
0
8mer+mismatch
631-657
0.003
2
6mer
514-540
0.003
5
8mer+mismatch
773-800
0.002
2
8mer+mismatch
853-871
0.002
2
8mer+mismatch
973-991
0.001
Not Conserved
RP11-244F12.3
hsa-miR-125a-5p
0.756
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000561241
Biotype: antisense
Gene id: ENSG00000259498
Gene Name: RP11-244F12.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1357-1364
0.018
3
7mer
545-564
0.009
1
6mer
813-834
0.002
2
DLX6-AS1
hsa-miR-125a-5p
0.755
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_015448.1
Biotype: antisense
Gene id: NR_015448.1 (gene)
Gene Name: DLX6-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
267-284
0.022
1
6mer
166-192
0.004
1
6mer
130-152
0.003
0
RP1-313I6.12
hsa-miR-125a-5p
0.755
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000605945
Biotype: antisense
Gene id: ENSG00000272009
Gene Name: RP1-313I6.12
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
336-360
0.026
1
6mer
444-468
0.003
1
LINC01010
hsa-miR-125a-5p
0.755
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000440090
Biotype: lincRNA
Gene id: ENSG00000236700
Gene Name: LINC01010
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1245-1270
0.016
5
6mer
64-82
0.006
1
6mer
1194-1215
0.005
4
6mer
689-707
0.003
3
RP11-284F21.9
hsa-miR-125a-5p
0.755
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000606343
Biotype: lincRNA
Gene id: ENSG00000272068
Gene Name: RP11-284F21.9
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2174-2192
0.013
1
8mer
1593-1608
0.010
1
6mer
446-471
0.002
0
6mer
2744-2759
0.002
0
6mer
1076-1102
0.002
1
RP11-893F2.15
hsa-miR-125a-5p
0.755
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000577175
Biotype: lincRNA
Gene id: ENSG00000263176
Gene Name: RP11-893F2.15
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
346-363
0.029
1
FLJ45079
hsa-miR-125a-5p
0.755
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000374983
Biotype: lincRNA
Gene id: ENSG00000204283
Gene Name: FLJ45079
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2386-2408
0.015
1
7mer
169-189
0.006
1
8mer
2177-2204
0.003
1
6mer
4266-4290
0.002
2
6mer
3688-3709
0.002
0
6mer
2784-2800
0.001
3
RP11-34P13.13
hsa-miR-125a-5p
0.755
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000484859
Biotype: antisense
Gene id: ENSG00000241860
Gene Name: RP11-34P13.13
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1196-1220
0.029
1
RP11-356C4.3
hsa-miR-125a-5p
0.755
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000562203
Biotype: lincRNA
Gene id: ENSG00000260507
Gene Name: RP11-356C4.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
140-162
0.029
0
XLOC_007688
hsa-miR-125a-5p
0.754
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015809
Biotype: transcript isomorph
Gene id: XLOC_007688
Gene Name: XLOC_007688
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
701-708
0.029
0
RP11-822E23.8
hsa-miR-125a-5p
0.754
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000426261
Biotype: processed_transcript
Gene id: ENSG00000272780
Gene Name: RP11-822E23.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
252-278
0.015
0
7mer
444-463
0.006
0
7mer
2321-2341
0.005
1
6mer
586-609
0.002
Not Conserved
6mer
1499-1512
0.001
0
RP11-227F19.2
hsa-miR-125a-5p
0.754
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000510602
Biotype: lincRNA
Gene id: ENSG00000249122
Gene Name: RP11-227F19.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
130-154
0.029
1
RP11-493E12.3
hsa-miR-125a-5p
0.754
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000462959
Biotype: processed_transcript
Gene id: ENSG00000274769
Gene Name: RP11-493E12.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
173-194
0.029
6
AP000289.6
hsa-miR-125a-5p
0.753
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000421051
Biotype: lincRNA
Gene id: ENSG00000226527
Gene Name: AP000289.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
335-341
0.025
1
6mer
640-661
0.004
2
LINC00461
hsa-miR-125a-5p
0.753
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000504246
Biotype: lincRNA
Gene id: ENSG00000245526
Gene Name: LINC00461
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
249-268
0.024
1
6mer
1986-2007
0.003
7
6mer
1330-1357
0.002
3
XLOC_000056
hsa-miR-125a-5p
0.752
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000841
Biotype: transcript isomorph
Gene id: XLOC_000056
Gene Name: XLOC_000056
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
98-118
0.029
0
CTD-2034I4.1
hsa-miR-125a-5p
0.752
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000559211
Biotype: lincRNA
Gene id: ENSG00000259543
Gene Name: CTD-2034I4.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
209-234
0.029
2
RP11-162D9.3
hsa-miR-125a-5p
0.752
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000529837
Biotype: antisense
Gene id: ENSG00000254687
Gene Name: RP11-162D9.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
365-388
0.016
0
7mer
427-447
0.009
1
6mer
120-124
0.004
0
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