LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-125a-5p


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Gene
miRNA
Score
DIANA Links
RP11-1007I13.4
hsa-miR-125a-5p
0.762
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000577437
Biotype: processed_transcript
Gene id: ENSG00000266560
Gene Name: RP11-1007I13.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
330-351
0.025
0
6mer
483-510
0.003
0
6mer
323-344
0.001
1
PWAR1
hsa-miR-125a-5p
0.761
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: NR_022009.1
Biotype: lincRNA
Gene id: NR_022009.1 (gene)
Gene Name: PWAR1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2345-2366
0.019
0
6mer
1873-1893
0.005
2
6mer
699-717
0.003
2
6mer
546-564
0.003
1
HOXB-AS3
hsa-miR-125a-5p
0.761
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000481995
Biotype: antisense
Gene id: ENSG00000233101
Gene Name: HOXB-AS3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
28-45
0.026
8
6mer
104-130
0.004
3
CTA-243E7.1
hsa-miR-125a-5p
0.761
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623980
Biotype: antisense
Gene id: ENSG00000279110
Gene Name: CTA-243E7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
75-99
0.005
1
7mer
1409-1434
0.005
Not Conserved
7mer
6827-6843
0.004
1
7mer
7801-7824
0.004
1
8mer+wobble
12752-12777
0.003
0
6mer
12576-12601
0.002
1
6mer
12523-12532
0.002
2
6mer
2762-2767
0.001
1
6mer
2508-2528
0.001
0
6mer
9621-9647
0.001
1
6mer
6660-6670
0.001
1
6mer
2480-2507
0.000
1
RP11-673E1.1
hsa-miR-125a-5p
0.761
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000509873
Biotype: lincRNA
Gene id: ENSG00000251600
Gene Name: RP11-673E1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
308-333
0.030
0
RP1-116K23.1
hsa-miR-125a-5p
0.761
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000542804
Biotype: lincRNA
Gene id: ENSG00000256763
Gene Name: RP1-116K23.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
439-461
0.030
0
PWRN1
hsa-miR-125a-5p
0.760
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000568609
Biotype: lincRNA
Gene id: ENSG00000259905
Gene Name: PWRN1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
299-324
0.021
1
6mer
980-988
0.004
0
6mer
9-29
0.004
0
LINC00664
hsa-miR-125a-5p
0.760
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000599078
Biotype: lincRNA
Gene id: ENSG00000268658
Gene Name: LINC00664
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1148-1167
0.027
0
6mer
1397-1401
0.003
1
LINC01426
hsa-miR-125a-5p
0.760
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000420877
Biotype: antisense
Gene id: ENSG00000234380
Gene Name: LINC01426
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2279-2298
0.013
1
8mer
388-413
0.011
1
6mer
184-207
0.003
0
6mer
1503-1525
0.002
1
RP5-1142A6.8
hsa-miR-125a-5p
0.760
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000333666
Biotype: antisense
Gene id: ENSG00000182376
Gene Name: RP5-1142A6.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
698-720
0.013
1
8mer
1440-1455
0.007
1
6mer
1309-1335
0.003
0
6mer
378-402
0.002
2
6mer
1658-1685
0.002
1
6mer
1518-1543
0.001
2
6mer
998-1024
0.001
Not Conserved
XLOC_002216
hsa-miR-125a-5p
0.759
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004342
Biotype: transcript isomorph
Gene id: XLOC_002216
Gene Name: XLOC_002216
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
121-140
0.013
1
6mer
19-45
0.011
1
6mer
216-242
0.006
0
LINC00662
hsa-miR-125a-5p
0.759
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000586954
Biotype: lincRNA
Gene id: ENSG00000261824
Gene Name: LINC00662
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
284-288
0.013
0
6mer
1658-1681
0.008
0
6mer
2053-2077
0.008
0
XLOC_009124
hsa-miR-125a-5p
0.759
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019298
Biotype: transcript isomorph
Gene id: XLOC_009124
Gene Name: XLOC_009124
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1326-1349
0.022
2
6mer
2323-2334
0.004
2
6mer
1867-1885
0.004
0
AC024560.2
hsa-miR-125a-5p
0.758
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000424493
Biotype: lincRNA
Gene id: ENSG00000236833
Gene Name: AC024560.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1363-1376
0.011
0
6mer
641-659
0.008
0
6mer
1354-1376
0.006
0
6mer
635-659
0.004
0
XLOC_001220
hsa-miR-125a-5p
0.758
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001834
Biotype: transcript isomorph
Gene id: XLOC_001220
Gene Name: XLOC_001220
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1609-1636
0.013
1
9mer
1495-1517
0.008
Not Conserved
6mer
1659-1682
0.005
1
6mer
212-236
0.003
0
XLOC_002079
hsa-miR-125a-5p
0.758
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00005139
Biotype: transcript isomorph
Gene id: XLOC_002079
Gene Name: XLOC_002079
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
598-613
0.013
0
7mer
991-1016
0.008
0
7mer
843-868
0.005
Not Conserved
7mer
746-770
0.003
Not Conserved
TEX26-AS1
hsa-miR-125a-5p
0.758
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000588425
Biotype: antisense
Gene id: ENSG00000224743
Gene Name: TEX26-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
441-463
0.029
1
RP3-395M20.8
hsa-miR-125a-5p
0.757
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000416860
Biotype: antisense
Gene id: ENSG00000238164
Gene Name: RP3-395M20.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3034-3044
0.014
1
8mer
401-428
0.011
0
6mer
1331-1357
0.001
1
6mer
1119-1144
0.001
0
7mer
1106-1132
0.001
0
6mer
1697-1719
0.001
1
XLOC_003406
hsa-miR-125a-5p
0.757
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006773
Biotype: transcript isomorph
Gene id: XLOC_003406
Gene Name: XLOC_003406
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3047-3064
0.015
1
6mer
4522-4540
0.009
1
7mer
3410-3416
0.003
0
6mer
3901-3921
0.002
0
FOXP1-IT1
hsa-miR-125a-5p
0.756
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000498714
Biotype: sense_intronic
Gene id: ENSG00000242094
Gene Name: FOXP1-IT1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
3508-3530
0.012
5
7mer
216-230
0.008
1
7mer
2006-2011
0.007
0
6mer
1315-1320
0.003
5
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