LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-125a-5p


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Gene
miRNA
Score
DIANA Links
XXbac-BPG254F23.7
hsa-miR-125a-5p
0.768
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000458375
Biotype: lincRNA
Gene id: ENSG00000232080
Gene Name: XXbac-BPG254F23.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
89-106
0.030
0
RP11-509A17.3
hsa-miR-125a-5p
0.768
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000557528
Biotype: lincRNA
Gene id: ENSG00000258654
Gene Name: RP11-509A17.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
237-259
0.022
0
6mer
326-352
0.008
1
RP11-508N12.2
hsa-miR-125a-5p
0.767
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000439901
Biotype: antisense
Gene id: ENSG00000230782
Gene Name: RP11-508N12.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1435-1452
0.019
3
8mer
994-1006
0.008
2
7mer
560-585
0.004
0
SLC14A2-AS1
hsa-miR-125a-5p
0.767
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000592899
Biotype: antisense
Gene id: ENSG00000267097
Gene Name: SLC14A2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
54-77
0.030
2
RP11-474D1.3
hsa-miR-125a-5p
0.767
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: NR_024457.2
Biotype: lincRNA
Gene id: NR_024457.2 (gene)
Gene Name: RP11-474D1.3
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2329-2352
0.011
1
7mer
1844-1870
0.006
0
6mer
156-181
0.005
1
6mer
987-1014
0.003
Not Conserved
6mer
769-773
0.003
1
6mer
1210-1223
0.001
1
6mer
2225-2246
0.001
0
CTB-58E17.9
hsa-miR-125a-5p
0.766
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000620144
Biotype: antisense
Gene id: ENSG00000275665
Gene Name: CTB-58E17.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
365-381
0.026
4
6mer
26-51
0.004
1
NCAM1-AS1
hsa-miR-125a-5p
0.766
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000526229
Biotype: antisense
Gene id: ENSG00000227487
Gene Name: NCAM1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
46-72
0.021
1
7mer
869-895
0.009
5
XLOC_010101
hsa-miR-125a-5p
0.766
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020255
Biotype: transcript isomorph
Gene id: XLOC_010101
Gene Name: XLOC_010101
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
Fibroblasts Foreskin Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3239-3263
0.025
3
6mer
851-865
0.005
5
LINC01520
hsa-miR-125a-5p
0.765
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000441457
Biotype: lincRNA
Gene id: ENSG00000230962
Gene Name: LINC01520
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
31-51
0.027
1
6mer
339-361
0.003
2
RP11-620J15.2
hsa-miR-125a-5p
0.765
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000499481
Biotype: lincRNA
Gene id: ENSG00000245651
Gene Name: RP11-620J15.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3240-3264
0.025
3
6mer
852-866
0.005
5
XLOC_002026
hsa-miR-125a-5p
0.765
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00005117
Biotype: transcript isomorph
Gene id: XLOC_002026
Gene Name: XLOC_002026
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
158-183
0.030
0
XLOC_003044
hsa-miR-125a-5p
0.764
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006440
Biotype: transcript isomorph
Gene id: XLOC_003044
Gene Name: XLOC_003044
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
174-180
0.030
1
NOP14-AS1
hsa-miR-125a-5p
0.764
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000512712
Biotype: antisense
Gene id: ENSG00000249673
Gene Name: NOP14-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2648-2671
0.012
1
8mer
782-793
0.008
1
7mer
3016-3036
0.003
0
6mer
2782-2807
0.002
1
6mer
1854-1871
0.001
1
6mer
2197-2216
0.001
0
6mer
883-904
0.001
1
6mer
2210-2235
0.001
0
6mer
2203-2222
0.001
0
6mer
1879-1895
0.000
0
FAM224A
hsa-miR-125a-5p
0.764
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000419557
Biotype: lincRNA
Gene id: ENSG00000233522
Gene Name: FAM224A
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1035-1061
0.030
0
RP11-153K16.1
hsa-miR-125a-5p
0.764
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000545400
Biotype: lincRNA
Gene id: ENSG00000256321
Gene Name: RP11-153K16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
427-434
0.028
Not Conserved
6mer
868-882
0.002
1
RP11-206L10.3
hsa-miR-125a-5p
0.764
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000416385
Biotype: lincRNA
Gene id: ENSG00000235373
Gene Name: RP11-206L10.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1196-1220
0.030
0
RP11-597K23.2
hsa-miR-125a-5p
0.763
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000559788
Biotype: lincRNA
Gene id: ENSG00000259518
Gene Name: RP11-597K23.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
288-315
0.030
1
RP11-503C24.6
hsa-miR-125a-5p
0.763
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000445442
Biotype: sense_intronic
Gene id: ENSG00000224417
Gene Name: RP11-503C24.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1035-1051
0.024
1
7mer
757-774
0.005
1
7mer
1708-1725
0.001
Not Conserved
XLOC_006356
hsa-miR-125a-5p
0.763
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013698
Biotype: transcript isomorph
Gene id: XLOC_006356
Gene Name: XLOC_006356
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
104-128
0.030
2
AP000997.2
hsa-miR-125a-5p
0.762
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000564619
Biotype: lincRNA
Gene id: ENSG00000260254
Gene Name: AP000997.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
8035-8048
0.011
0
7mer
830-845
0.008
1
6mer
3368-3387
0.002
5
6mer
7314-7334
0.002
1
6mer
3531-3535
0.002
5
7mer
6419-6440
0.002
0
6mer
2496-2516
0.002
0
6mer
6068-6085
0.001
0
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