LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-125a-5p


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Gene
miRNA
Score
DIANA Links
RP11-104H15.10
hsa-miR-125a-5p
0.772
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000575331
Biotype: processed_transcript
Gene id: ENSG00000272884
Gene Name: RP11-104H15.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5309-5335
0.009
1
8mer
1347-1372
0.007
5
7mer
1117-1126
0.003
2
7mer
939-958
0.003
3
6mer
354-373
0.003
5
6mer
3774-3790
0.002
4
6mer
4932-4957
0.001
1
6mer
5053-5072
0.001
Not Conserved
6mer
1031-1047
0.001
3
XLOC_003240
hsa-miR-125a-5p
0.771
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006650
Biotype: transcript isomorph
Gene id: XLOC_003240
Gene Name: XLOC_003240
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
8660-8678
0.012
1
7mer
8085-8105
0.007
0
6mer
8441-8463
0.002
3
7mer
7589-7612
0.002
1
6mer
4520-4524
0.002
1
7mer
8415-8435
0.001
0
6mer
1510-1531
0.001
2
6mer
6291-6312
0.001
Not Conserved
6mer
2222-2244
0.001
0
6mer
5974-6001
0.001
1
6mer
2110-2115
0.001
1
6mer
6807-6833
0.001
1
XLOC_002258
hsa-miR-125a-5p
0.771
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004374
Biotype: transcript isomorph
Gene id: XLOC_002258
Gene Name: XLOC_002258
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
806-822
0.031
1
AP000330.8
hsa-miR-125a-5p
0.771
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: NR_038885.1
Biotype: lincRNA
Gene id: NR_038885.1 (gene)
Gene Name: AP000330.8
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2211-2230
0.013
1
8mer
320-345
0.012
1
6mer
116-139
0.003
0
6mer
1435-1457
0.002
1
RP5-944M2.3
hsa-miR-125a-5p
0.771
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000397346
Biotype: lincRNA
Gene id: ENSG00000214043
Gene Name: RP5-944M2.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1849-1872
0.029
1
7mer
917-937
0.002
Not Conserved
RP11-363G10.2
hsa-miR-125a-5p
0.771
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000375625
Biotype: lincRNA
Gene id: ENSG00000179028
Gene Name: RP11-363G10.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
377-404
0.029
2
6mer
1362-1383
0.002
1
RP11-247C2.2
hsa-miR-125a-5p
0.771
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000514871
Biotype: lincRNA
Gene id: ENSG00000248540
Gene Name: RP11-247C2.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
448-473
0.016
2
7mer
2351-2375
0.008
1
6mer
961-985
0.002
1
6mer
2135-2153
0.002
1
6mer
2077-2101
0.001
2
XLOC_011280
hsa-miR-125a-5p
0.770
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023959
Biotype: transcript isomorph
Gene id: XLOC_011280
Gene Name: XLOC_011280
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
Fibroblasts Lung Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
584-609
0.027
4
6mer
95-119
0.004
3
LOC284933
hsa-miR-125a-5p
0.770
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: NR_038917.1
Biotype: antisense
Gene id: NR_038917.1 (gene)
Gene Name: LOC284933
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1329-1335
0.023
1
7mer
733-758
0.006
1
6mer
566-590
0.001
0
LINC00565
hsa-miR-125a-5p
0.770
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000562710
Biotype: lincRNA
Gene id: ENSG00000260910
Gene Name: LINC00565
UCSC graphic:
Expression:
  Cell Line Tissue Category
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1450-1472
0.028
1
6mer
641-665
0.002
1
RP4-734G22.3
hsa-miR-125a-5p
0.770
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000606802
Biotype: antisense
Gene id: ENSG00000272078
Gene Name: RP4-734G22.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
7433-7457
0.005
5
6mer
7371-7398
0.003
7
7mer
4867-4887
0.003
6
6mer
107-126
0.003
2
6mer
7126-7148
0.002
5
7mer
3696-3718
0.002
1
7mer
3226-3249
0.002
1
6mer
5114-5138
0.002
8
6mer
7186-7212
0.001
5
7mer
2418-2438
0.001
1
6mer
6102-6123
0.001
1
6mer
6605-6630
0.001
0
7mer
3283-3309
0.001
2
6mer
820-835
0.001
1
6mer
5778-5802
0.001
2
6mer
6667-6691
0.001
1
6mer
6639-6665
0.000
2
6mer
6694-6716
0.000
2
6mer
5183-5208
0.000
3
XLOC_011176
hsa-miR-125a-5p
0.770
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023866
Biotype: transcript isomorph
Gene id: XLOC_011176
Gene Name: XLOC_011176
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
170-176
0.024
1
7mer
1126-1131
0.007
Not Conserved
EMC3-AS1
hsa-miR-125a-5p
0.769
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: NR_103821.1
Biotype: antisense
Gene id: NR_103821.1 (gene)
Gene Name: EMC3-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
4356-4383
0.017
0
8mer
3188-3213
0.006
Not Conserved
6mer
91-115
0.002
Not Conserved
6mer
3672-3695
0.002
Not Conserved
6mer
1172-1194
0.001
0
6mer
1914-1929
0.001
0
6mer
3108-3133
0.001
Not Conserved
6mer
2632-2659
0.001
Not Conserved
6mer
2453-2476
0.000
Not Conserved
RP11-266K4.14
hsa-miR-125a-5p
0.769
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000618256
Biotype: lincRNA
Gene id: ENSG00000275367
Gene Name: RP11-266K4.14
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
108-120
0.012
1
6mer
414-426
0.010
1
6mer
1951-1973
0.005
1
6mer
2739-2758
0.003
0
RP11-822E23.2
hsa-miR-125a-5p
0.769
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000579239
Biotype: antisense
Gene id: ENSG00000266466
Gene Name: RP11-822E23.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
876-895
0.030
1
AC005614.5
hsa-miR-125a-5p
0.769
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000595508
Biotype: processed_transcript
Gene id: ENSG00000269749
Gene Name: AC005614.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
299-322
0.014
1
7mer
22-45
0.013
1
6mer
230-249
0.003
1
BIN3-IT1
hsa-miR-125a-5p
0.769
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: NR_027715.1
Biotype: sense
Gene id: NR_027715.1 (gene)
Gene Name: BIN3-IT1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1778-1794
0.023
6
6mer
389-416
0.005
4
6mer
986-1004
0.002
1
NEXN-AS1
hsa-miR-125a-5p
0.769
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000597757
Biotype: antisense
Gene id: ENSG00000235927
Gene Name: NEXN-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
583-601
0.030
1
RP11-532M24.1
hsa-miR-125a-5p
0.769
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000606244
Biotype: antisense
Gene id: ENSG00000272486
Gene Name: RP11-532M24.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
155-171
0.030
1
C1orf213
hsa-miR-125a-5p
0.768
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000335648
Biotype: antisense
Gene id: ENSG00000249087
Gene Name: C1orf213
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1620-1644
0.016
2
7mer
2126-2147
0.014
4
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