LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-125a-5p


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Gene
miRNA
Score
DIANA Links
RP5-875O13.1
hsa-miR-125a-5p
0.778
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000614408
Biotype: pseudogene
Gene id: ENSG00000233421
Gene Name: RP5-875O13.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
59-85
0.026
0
6mer
134-160
0.006
1
XLOC_011102
hsa-miR-125a-5p
0.778
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022831
Biotype: transcript isomorph
Gene id: XLOC_011102
Gene Name: XLOC_011102
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2655-2677
0.012
0
6mer
2509-2535
0.006
4
6mer
52-69
0.005
0
6mer
2542-2561
0.003
1
6mer
2088-2106
0.003
4
6mer
1570-1595
0.002
1
XLOC_004946
hsa-miR-125a-5p
0.778
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009744
Biotype: transcript isomorph
Gene id: XLOC_004946
Gene Name: XLOC_004946
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
282-309
0.031
1
XLOC_006226
hsa-miR-125a-5p
0.777
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013573
Biotype: transcript isomorph
Gene id: XLOC_006226
Gene Name: XLOC_006226
UCSC graphic: -
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Skeletal Muscle Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
169-185
0.031
1
XLOC_001835
hsa-miR-125a-5p
0.776
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004997
Biotype: transcript isomorph
Gene id: XLOC_001835
Gene Name: XLOC_001835
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
291-311
0.031
1
SLC14A2-AS1
hsa-miR-125a-5p
0.776
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000592286
Biotype: antisense
Gene id: ENSG00000267097
Gene Name: SLC14A2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
42-65
0.031
2
DKFZP434L187
hsa-miR-125a-5p
0.775
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000562624
Biotype: lincRNA
Gene id: ENSG00000225930
Gene Name: DKFZP434L187
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
802-815
0.012
1
6mer
3919-3946
0.004
1
7mer
747-764
0.003
0
6mer
1565-1576
0.003
1
6mer
3744-3763
0.003
0
6mer
736-755
0.002
0
6mer
2127-2153
0.002
2
6mer
2297-2320
0.001
0
6mer
2161-2182
0.001
2
AC096670.3
hsa-miR-125a-5p
0.774
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000376593
Biotype: antisense
Gene id: ENSG00000204581
Gene Name: AC096670.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2470-2490
0.016
2
7mer
791-807
0.006
1
7mer
1685-1708
0.006
3
6mer
2329-2354
0.002
0
BCDIN3D-AS1
hsa-miR-125a-5p
0.774
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: NR_027499.1
Biotype: antisense
Gene id: NR_027499.1 (gene)
Gene Name: BCDIN3D-AS1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
342-365
0.019
5
7mer
2288-2315
0.012
0
RP11-153K16.1
hsa-miR-125a-5p
0.774
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000541288
Biotype: lincRNA
Gene id: ENSG00000256321
Gene Name: RP11-153K16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
322-329
0.031
Not Conserved
RP11-815J21.3
hsa-miR-125a-5p
0.774
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000560712
Biotype: antisense
Gene id: ENSG00000259276
Gene Name: RP11-815J21.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
349-373
0.031
3
CTA-125H2.2
hsa-miR-125a-5p
0.774
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000609809
Biotype: antisense
Gene id: ENSG00000231933
Gene Name: CTA-125H2.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
351-365
0.020
1
7mer
732-755
0.011
1
RP11-1101K5.1
hsa-miR-125a-5p
0.773
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000521753
Biotype: lincRNA
Gene id: ENSG00000253434
Gene Name: RP11-1101K5.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
642-652
0.028
2
6mer
277-296
0.003
1
RP11-274B18.4
hsa-miR-125a-5p
0.773
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000413269
Biotype: lincRNA
Gene id: ENSG00000226337
Gene Name: RP11-274B18.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1418-1437
0.031
0
RP11-709D24.6
hsa-miR-125a-5p
0.773
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000569678
Biotype: antisense
Gene id: ENSG00000261442
Gene Name: RP11-709D24.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
551-557
0.009
0
7mer
757-771
0.007
1
7mer
1510-1533
0.005
1
6mer
1020-1041
0.003
0
6mer
1359-1385
0.002
1
6mer
31-56
0.002
0
6mer
720-735
0.002
1
HOXB-AS3
hsa-miR-125a-5p
0.773
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000460041
Biotype: antisense
Gene id: ENSG00000233101
Gene Name: HOXB-AS3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
26-43
0.023
8
6mer
102-128
0.004
3
7mer
379-397
0.003
0
PSMD5-AS1
hsa-miR-125a-5p
0.772
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000447891
Biotype: antisense
Gene id: ENSG00000226752
Gene Name: PSMD5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1100-1106
0.023
1
7mer
1415-1431
0.008
0
RP11-613D13.8
hsa-miR-125a-5p
0.772
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000501541
Biotype: lincRNA
Gene id: ENSG00000244953
Gene Name: RP11-613D13.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1582-1591
0.013
0
9mer
1365-1390
0.009
Not Conserved
7mer
620-642
0.003
0
6mer
315-339
0.002
1
6mer
937-961
0.002
1
6mer
1099-1121
0.001
0
RP11-736E3.1
hsa-miR-125a-5p
0.772
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000430610
Biotype: antisense
Gene id: ENSG00000225457
Gene Name: RP11-736E3.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
327-352
0.031
1
BCDIN3D-AS1
hsa-miR-125a-5p
0.772
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000548872
Biotype: antisense
Gene id: ENSG00000258057
Gene Name: BCDIN3D-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
343-366
0.019
5
7mer
2289-2316
0.011
0
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