LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-125a-5p


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Gene
miRNA
Score
DIANA Links
RP11-406A20.4
hsa-miR-125a-5p
0.782
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000426593
Biotype: lincRNA
Gene id: ENSG00000227555
Gene Name: RP11-406A20.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
61-85
0.030
1
6mer
1576-1587
0.002
1
XLOC_007240
hsa-miR-125a-5p
0.782
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00015184
Biotype: transcript isomorph
Gene id: XLOC_007240
Gene Name: XLOC_007240
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
- Kidney Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
104-110
0.032
1
RBFADN
hsa-miR-125a-5p
0.782
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000568911
Biotype: lincRNA
Gene id: ENSG00000261126
Gene Name: RBFADN
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1183-1206
0.011
0
7mer
1760-1783
0.007
1
9mer
1879-1902
0.005
1
7mer
1858-1884
0.002
1
6mer
4138-4155
0.002
1
6mer
3940-3963
0.002
1
6mer
3099-3121
0.001
0
6mer
3541-3562
0.001
0
6mer
3433-3448
0.001
0
6mer
3228-3251
0.000
0
RP11-88I18.2
hsa-miR-125a-5p
0.781
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000590767
Biotype: antisense
Gene id: ENSG00000233178
Gene Name: RP11-88I18.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
138-157
0.021
1
7mer
666-680
0.010
2
RP11-522B15.7
hsa-miR-125a-5p
0.781
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000560586
Biotype: lincRNA
Gene id: ENSG00000259534
Gene Name: RP11-522B15.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
332-355
0.031
1
ZNF833P
hsa-miR-125a-5p
0.781
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000344893
Biotype: lincRNA
Gene id: ENSG00000197332
Gene Name: ZNF833P
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3039-3060
0.030
0
6mer
1247-1260
0.001
0
XLOC_010979
hsa-miR-125a-5p
0.781
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022688
Biotype: transcript isomorph
Gene id: XLOC_010979
Gene Name: XLOC_010979
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
790-814
0.024
0
6mer
87-108
0.008
3
RP11-406H4.1
hsa-miR-125a-5p
0.780
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000547633
Biotype: antisense
Gene id: ENSG00000258039
Gene Name: RP11-406H4.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
79-104
0.031
2
CTA-246H3.12
hsa-miR-125a-5p
0.780
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000609330
Biotype: lincRNA
Gene id: ENSG00000272942
Gene Name: CTA-246H3.12
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
239-257
0.031
0
CTD-2231E14.8
hsa-miR-125a-5p
0.779
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000597983
Biotype: antisense
Gene id: ENSG00000269243
Gene Name: CTD-2231E14.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
342-365
0.007
1
7mer
590-612
0.007
0
8mer
2633-2647
0.007
0
7mer
215-241
0.005
1
7mer
466-485
0.004
1
6mer
1915-1939
0.001
1
RP11-483E7.1
hsa-miR-125a-5p
0.779
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: NR_110187.1
Biotype: lincRNA
Gene id: NR_110187.1 (gene)
Gene Name: RP11-483E7.1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
136-163
0.031
1
BCDIN3D-AS1
hsa-miR-125a-5p
0.779
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: NR_027501.1
Biotype: antisense
Gene id: NR_027501.1 (gene)
Gene Name: BCDIN3D-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
338-361
0.019
5
7mer
2284-2311
0.012
0
LOC100630918
hsa-miR-125a-5p
0.779
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_038942.1
Biotype: lincRNA
Gene id: NR_038942.1 (gene)
Gene Name: LOC100630918
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
458-483
0.026
0
6mer
649-664
0.004
1
6mer
1226-1244
0.001
0
AC124997.1
hsa-miR-125a-5p
0.779
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000422117
Biotype: lincRNA
Gene id: ENSG00000235731
Gene Name: AC124997.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Heart Normal/Primary
- Liver Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
709-724
0.030
1
6mer
1334-1348
0.002
2
AC004744.3
hsa-miR-125a-5p
0.779
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000447057
Biotype: antisense
Gene id: ENSG00000226522
Gene Name: AC004744.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
216-242
0.027
0
6mer
188-197
0.004
1
XLOC_009251
hsa-miR-125a-5p
0.779
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019441
Biotype: transcript isomorph
Gene id: XLOC_009251
Gene Name: XLOC_009251
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
33-38
0.031
1
NEAT1
hsa-miR-125a-5p
0.778
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000501122
Biotype: lincRNA
Gene id: ENSG00000245532
Gene Name: NEAT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
11849-11872
0.010
1
7mer
44-66
0.008
0
7mer
17739-17765
0.003
1
6mer
336-350
0.003
1
6mer
61-86
0.002
0
6mer
52-75
0.002
Not Conserved
6mer
6467-6492
0.001
1
6mer
19679-19702
0.001
1
6mer
13240-13260
0.001
0
6mer
13340-13367
0.000
1
RP11-153K16.1
hsa-miR-125a-5p
0.778
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000534841
Biotype: lincRNA
Gene id: ENSG00000256321
Gene Name: RP11-153K16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
381-388
0.031
Not Conserved
WEE2-AS1
hsa-miR-125a-5p
0.778
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000465110
Biotype: antisense
Gene id: ENSG00000228775
Gene Name: WEE2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1053-1074
0.028
3
6mer
447-470
0.003
1
AC003075.4
hsa-miR-125a-5p
0.778
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000443664
Biotype: antisense
Gene id: ENSG00000237773
Gene Name: AC003075.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
100-126
0.031
0
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