LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-125a-5p


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Gene
miRNA
Score
DIANA Links
CTD-2036P10.3
hsa-miR-125a-5p
0.790
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000500850
Biotype: lincRNA
Gene id: ENSG00000246283
Gene Name: CTD-2036P10.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
171-194
0.018
1
7mer
1784-1802
0.013
3
6mer
466-483
0.002
2
XLOC_009943
hsa-miR-125a-5p
0.789
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020641
Biotype: transcript isomorph
Gene id: XLOC_009943
Gene Name: XLOC_009943
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
329-348
0.029
1
6mer
371-388
0.003
0
GATA2-AS1
hsa-miR-125a-5p
0.789
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000473958
Biotype: antisense
Gene id: ENSG00000244300
Gene Name: GATA2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
649-674
0.027
1
6mer
497-521
0.004
1
6mer
47-71
0.002
Not Conserved
RP11-675M1.2
hsa-miR-125a-5p
0.788
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000531176
Biotype: antisense
Gene id: ENSG00000254705
Gene Name: RP11-675M1.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
501-521
0.032
2
CTD-2303H24.2
hsa-miR-125a-5p
0.788
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000609578
Biotype: retained_intron
Gene id: ENSG00000273018
Gene Name: CTD-2303H24.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
611-633
0.032
Not Conserved
XLOC_008498
hsa-miR-125a-5p
0.788
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018219
Biotype: transcript isomorph
Gene id: XLOC_008498
Gene Name: XLOC_008498
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
414-438
0.032
1
XLOC_003839
hsa-miR-125a-5p
0.788
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008387
Biotype: transcript isomorph
Gene id: XLOC_003839
Gene Name: XLOC_003839
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
679-706
0.005
0
6mer
236-248
0.004
0
6mer
86-99
0.004
0
6mer
606-631
0.004
0
6mer
529-556
0.004
0
6mer
147-174
0.003
0
6mer
439-466
0.003
0
6mer
296-323
0.003
0
6mer
371-391
0.002
0
XLOC_002488
hsa-miR-125a-5p
0.787
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004577
Biotype: transcript isomorph
Gene id: XLOC_002488
Gene Name: XLOC_002488
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1799-1805
0.031
2
6mer
575-591
0.001
0
XLOC_009474
hsa-miR-125a-5p
0.787
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019666
Biotype: transcript isomorph
Gene id: XLOC_009474
Gene Name: XLOC_009474
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3838-3860
0.023
3
6mer
7103-7124
0.008
9
6mer
2219-2236
0.001
1
XLOC_000291
hsa-miR-125a-5p
0.787
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001024
Biotype: transcript isomorph
Gene id: XLOC_000291
Gene Name: XLOC_000291
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
675-700
0.032
0
RP5-1063M23.1
hsa-miR-125a-5p
0.786
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000505276
Biotype: lincRNA
Gene id: ENSG00000250770
Gene Name: RP5-1063M23.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2069-2075
0.026
1
6mer
628-650
0.005
3
6mer
1406-1433
0.002
1
LINC00475
hsa-miR-125a-5p
0.786
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000416438
Biotype: lincRNA
Gene id: ENSG00000225511
Gene Name: LINC00475
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
466-490
0.013
0
7mer
2154-2170
0.008
0
6mer
2097-2121
0.005
0
7mer
1883-1900
0.004
Not Conserved
6mer
2165-2189
0.003
0
KDM5C-IT1
hsa-miR-125a-5p
0.786
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000412242
Biotype: sense_intronic
Gene id: ENSG00000235262
Gene Name: KDM5C-IT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
440-462
0.032
2
AC087491.2
hsa-miR-125a-5p
0.786
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000398554
Biotype: lincRNA
Gene id: ENSG00000214546
Gene Name: AC087491.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
118-141
0.032
8
LINC01152
hsa-miR-125a-5p
0.785
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000538693
Biotype: lincRNA
Gene id: ENSG00000256124
Gene Name: LINC01152
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
87-103
0.032
1
LINC01410
hsa-miR-125a-5p
0.785
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000424345
Biotype: lincRNA
Gene id: ENSG00000238113
Gene Name: LINC01410
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1379-1400
0.030
0
6mer
2522-2543
0.002
Not Conserved
XLOC_009337
hsa-miR-125a-5p
0.785
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019542
Biotype: transcript isomorph
Gene id: XLOC_009337
Gene Name: XLOC_009337
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
179-185
0.028
4
6mer
313-335
0.004
1
RP11-114F10.3
hsa-miR-125a-5p
0.784
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000548901
Biotype: antisense
Gene id: ENSG00000257438
Gene Name: RP11-114F10.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
168-185
0.021
Not Conserved
7mer
537-563
0.011
1
AC007308.6
hsa-miR-125a-5p
0.783
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000430719
Biotype: antisense
Gene id: ENSG00000234252
Gene Name: AC007308.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2042-2066
0.027
0
6mer
2068-2092
0.005
1
TTN-AS1
hsa-miR-125a-5p
0.783
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000431259
Biotype: antisense
Gene id: ENSG00000237298
Gene Name: TTN-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
679-703
0.032
4
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