LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-125a-5p


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Gene
miRNA
Score
DIANA Links
LINC00599
hsa-miR-125a-5p
0.796
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000517675
Biotype: lincRNA
Gene id: ENSG00000253230
Gene Name: LINC00599
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3116-3143
0.021
1
7mer
2454-2467
0.008
1
7mer
2866-2884
0.003
0
6mer
1961-1980
0.001
1
RP11-197N18.7
hsa-miR-125a-5p
0.796
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000506255
Biotype: lincRNA
Gene id: ENSG00000251497
Gene Name: RP11-197N18.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
103-129
0.022
1
6mer
439-447
0.003
1
6mer
1458-1480
0.002
1
6mer
156-176
0.002
0
6mer
1915-1942
0.002
1
6mer
693-705
0.002
Not Conserved
RP11-31F15.2
hsa-miR-125a-5p
0.796
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_103777.1
Biotype: lincRNA
Gene id: NR_103777.1 (gene)
Gene Name: RP11-31F15.2
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1493-1511
0.017
1
7mer
2405-2425
0.015
1
AC003090.1
hsa-miR-125a-5p
0.796
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000423689
Biotype: lincRNA
Gene id: ENSG00000223561
Gene Name: AC003090.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
482-504
0.033
4
XLOC_000340
hsa-miR-125a-5p
0.795
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001092
Biotype: transcript isomorph
Gene id: XLOC_000340
Gene Name: XLOC_000340
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
Fibroblasts Foreskin Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1893-1915
0.020
1
7mer
1979-1996
0.013
0
CTD-3049M7.1
hsa-miR-125a-5p
0.795
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000557481
Biotype: lincRNA
Gene id: ENSG00000258754
Gene Name: CTD-3049M7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2185-2204
0.019
0
7mer
2990-3011
0.006
1
6mer
2797-2817
0.003
2
6mer
581-600
0.002
2
6mer
1143-1164
0.002
1
6mer
2040-2057
0.001
0
HOXA-AS2
hsa-miR-125a-5p
0.795
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000517635
Biotype: antisense
Gene id: ENSG00000253552
Gene Name: HOXA-AS2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1679-1693
0.023
5
7mer
2404-2426
0.005
1
7mer
1821-1844
0.003
Not Conserved
6mer
358-381
0.002
2
CTC-471J1.8
hsa-miR-125a-5p
0.794
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000598982
Biotype: processed_transcript
Gene id: ENSG00000267827
Gene Name: CTC-471J1.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
150-173
0.016
1
7mer
184-206
0.012
0
6mer
167-188
0.005
2
LL22NC03-22D1.1
hsa-miR-125a-5p
0.794
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624601
Biotype: lincRNA
Gene id: ENSG00000279003
Gene Name: LL22NC03-22D1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
18974-19001
0.005
0
7mer
9460-9479
0.004
1
7mer
27434-27439
0.003
1
7mer
11819-11824
0.003
1
6mer
5654-5678
0.002
4
6mer
17654-17662
0.002
2
6mer
3409-3413
0.002
1
6mer
20263-20287
0.001
1
6mer
24994-25013
0.001
2
7mer
25094-25118
0.001
1
6mer
24503-24514
0.001
0
6mer
12188-12205
0.001
0
6mer
1976-1984
0.001
Not Conserved
6mer
9326-9345
0.001
0
6mer
14061-14074
0.001
2
6mer
10303-10323
0.001
0
6mer
24521-24538
0.000
1
6mer
10371-10393
0.000
0
RP11-301L8.2
hsa-miR-125a-5p
0.794
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000411847
Biotype: antisense
Gene id: ENSG00000233110
Gene Name: RP11-301L8.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1020-1027
0.016
1
9mer
174-187
0.016
0
RP11-31F15.2
hsa-miR-125a-5p
0.794
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000421157
Biotype: lincRNA
Gene id: ENSG00000238198
Gene Name: RP11-31F15.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1493-1511
0.017
1
7mer
2405-2425
0.015
1
RP11-135J2.3
hsa-miR-125a-5p
0.793
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000420237
Biotype: lincRNA
Gene id: ENSG00000223842
Gene Name: RP11-135J2.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
182-206
0.027
1
6mer
118-138
0.005
1
ZFP91-CNTF
hsa-miR-125a-5p
0.792
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: NR_024091.1
Biotype: sense
Gene id: NR_024091.1 (gene)
Gene Name: ZFP91-CNTF
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
905-921
0.021
8
6mer
462-487
0.005
7
6mer
1831-1857
0.003
8
6mer
1619-1639
0.002
6
6mer
2605-2630
0.001
1
6mer
2584-2609
0.001
2
LOC729732
hsa-miR-125a-5p
0.792
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: NR_047662.2
Biotype: lincRNA
Gene id: NR_047662.2 (gene)
Gene Name: LOC729732
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
584-608
0.015
0
7mer
947-968
0.004
0
6mer
3501-3520
0.003
1
6mer
2503-2525
0.002
3
6mer
3116-3138
0.002
1
6mer
3687-3701
0.002
1
6mer
2812-2834
0.002
2
6mer
2150-2173
0.001
1
6mer
2374-2388
0.001
2
LINC01118
hsa-miR-125a-5p
0.792
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000409912
Biotype: lincRNA
Gene id: ENSG00000222005
Gene Name: LINC01118
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Skeletal Muscle Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
399-418
0.033
0
HOXA-AS2
hsa-miR-125a-5p
0.791
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000521159
Biotype: antisense
Gene id: ENSG00000253552
Gene Name: HOXA-AS2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
54-68
0.032
5
XLOC_009026
hsa-miR-125a-5p
0.791
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019822
Biotype: transcript isomorph
Gene id: XLOC_009026
Gene Name: XLOC_009026
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
86-102
0.032
0
HOXA-AS2
hsa-miR-125a-5p
0.791
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000517550
Biotype: antisense
Gene id: ENSG00000253552
Gene Name: HOXA-AS2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
245-259
0.032
5
RP11-90M2.5
hsa-miR-125a-5p
0.791
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000616786
Biotype: antisense
Gene id: ENSG00000276968
Gene Name: RP11-90M2.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
209-229
0.032
1
XLOC_009021
hsa-miR-125a-5p
0.790
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019195
Biotype: transcript isomorph
Gene id: XLOC_009021
Gene Name: XLOC_009021
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2506-2532
0.018
1
7mer
1075-1099
0.004
Not Conserved
6mer
139-165
0.004
1
7mer
695-717
0.003
0
6mer
2048-2068
0.002
0
6mer
2098-2113
0.001
1
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