LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-125a-5p


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Gene
miRNA
Score
DIANA Links
RP11-6N17.2
hsa-miR-125a-5p
0.809
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000580282
Biotype: lincRNA
Gene id: ENSG00000266821
Gene Name: RP11-6N17.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2644-2655
0.023
2
7mer
2534-2559
0.009
2
6mer
928-943
0.002
0
XLOC_012387
hsa-miR-125a-5p
0.809
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025558
Biotype: transcript isomorph
Gene id: XLOC_012387
Gene Name: XLOC_012387
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1275-1295
0.030
0
6mer
967-981
0.003
2
6mer
831-849
0.001
0
XLOC_000266
hsa-miR-125a-5p
0.808
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001003
Biotype: transcript isomorph
Gene id: XLOC_000266
Gene Name: XLOC_000266
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
147-158
0.016
0
9mer
184-204
0.016
0
6mer
253-280
0.002
0
SPACA6P
hsa-miR-125a-5p
0.808
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000331594
Biotype: pseudogene
Gene id: ENSG00000182310
Gene Name: SPACA6P
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
915-939
0.029
1
6mer
208-229
0.005
4
RP11-349H17.2
hsa-miR-125a-5p
0.808
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000615734
Biotype: sense_intronic
Gene id: ENSG00000275805
Gene Name: RP11-349H17.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1262-1278
0.026
0
6mer
640-666
0.006
6
6mer
1210-1235
0.002
1
RP11-70J12.1
hsa-miR-125a-5p
0.807
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000457383
Biotype: sense_intronic
Gene id: ENSG00000230001
Gene Name: RP11-70J12.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
605-623
0.034
2
CTD-2017D11.1
hsa-miR-125a-5p
0.807
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000597683
Biotype: lincRNA
Gene id: ENSG00000268362
Gene Name: CTD-2017D11.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1659-1680
0.013
0
6mer
1596-1612
0.011
1
6mer
545-562
0.010
1
RP11-400F19.18
hsa-miR-125a-5p
0.807
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000591237
Biotype: sense_intronic
Gene id: ENSG00000267632
Gene Name: RP11-400F19.18
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
45-70
0.034
2
RP11-7F17.3
hsa-miR-125a-5p
0.805
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000557526
Biotype: lincRNA
Gene id: ENSG00000258819
Gene Name: RP11-7F17.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1613-1637
0.031
1
6mer
1325-1352
0.003
4
AP000472.2
hsa-miR-125a-5p
0.805
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000419467
Biotype: lincRNA
Gene id: ENSG00000233215
Gene Name: AP000472.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
52-76
0.034
0
RP11-59C5.3
hsa-miR-125a-5p
0.805
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000617058
Biotype: antisense
Gene id: ENSG00000273599
Gene Name: RP11-59C5.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4990-5007
0.024
1
6mer
5367-5384
0.005
1
6mer
1587-1602
0.002
3
7mer
2485-2505
0.002
1
6mer
2766-2782
0.001
0
6mer
3798-3818
0.000
1
RP5-1059L7.1
hsa-miR-125a-5p
0.805
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000614771
Biotype: antisense
Gene id: ENSG00000278709
Gene Name: RP5-1059L7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
209-232
0.017
1
7mer
1529-1551
0.010
0
7mer
2094-2112
0.004
0
6mer
995-1018
0.002
0
6mer
1261-1287
0.002
1
DKFZp434L192
hsa-miR-125a-5p
0.805
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000566570
Biotype: lincRNA
Gene id: ENSG00000261275
Gene Name: DKFZp434L192
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3514-3526
0.012
0
7mer
809-835
0.010
0
6mer
419-435
0.004
1
7mer
3674-3696
0.004
0
6mer
2676-2700
0.003
1
6mer
863-879
0.002
0
KIF9-AS1
hsa-miR-125a-5p
0.805
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000429315
Biotype: antisense
Gene id: ENSG00000227398
Gene Name: KIF9-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
460-485
0.019
3
8mer
2178-2194
0.007
0
7mer
414-428
0.003
0
6mer
4333-4352
0.002
1
7mer
3291-3310
0.001
1
6mer
2491-2517
0.001
1
6mer
2270-2296
0.001
1
RP11-347J14.7
hsa-miR-125a-5p
0.803
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000423499
Biotype: lincRNA
Gene id: ENSG00000231140
Gene Name: RP11-347J14.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Ovary Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
701-708
0.034
0
RP11-42I10.1
hsa-miR-125a-5p
0.802
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000565072
Biotype: lincRNA
Gene id: ENSG00000260086
Gene Name: RP11-42I10.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
177-191
0.034
2
XLOC_012406
hsa-miR-125a-5p
0.802
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025579
Biotype: transcript isomorph
Gene id: XLOC_012406
Gene Name: XLOC_012406
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Breast Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
730-750
0.029
2
6mer
51-55
0.005
0
RP11-227G15.9
hsa-miR-125a-5p
0.802
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000584125
Biotype: lincRNA
Gene id: ENSG00000264083
Gene Name: RP11-227G15.9
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
512-534
0.034
0
RP11-501J20.5
hsa-miR-125a-5p
0.802
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000425264
Biotype: antisense
Gene id: ENSG00000225936
Gene Name: RP11-501J20.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
121-143
0.016
0
7mer
621-640
0.011
7
6mer
201-223
0.004
3
6mer
60-82
0.003
0
C15orf37
hsa-miR-125a-5p
0.801
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000560255
Biotype: antisense
Gene id: ENSG00000259642
Gene Name: C15orf37
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4015-4021
0.024
0
7mer
3873-3892
0.008
0
7mer
1770-1796
0.002
0
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