LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-125a-5p


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Gene
miRNA
Score
DIANA Links
RP11-1112C15.1
hsa-miR-125a-5p
0.815
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000522992
Biotype: lincRNA
Gene id: ENSG00000205293
Gene Name: RP11-1112C15.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2021-2043
0.035
0
RP11-19D2.2
hsa-miR-125a-5p
0.815
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000569178
Biotype: lincRNA
Gene id: ENSG00000261249
Gene Name: RP11-19D2.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
652-674
0.035
4
RP11-473M20.16
hsa-miR-125a-5p
0.814
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000570843
Biotype: lincRNA
Gene id: ENSG00000261889
Gene Name: RP11-473M20.16
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
698-723
0.035
1
RP11-20J15.3
hsa-miR-125a-5p
0.814
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000452578
Biotype: lincRNA
Gene id: ENSG00000229116
Gene Name: RP11-20J15.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
763-787
0.025
0
6mer
1026-1040
0.009
1
NUTM2A-AS1
hsa-miR-125a-5p
0.813
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000420424
Biotype: antisense
Gene id: ENSG00000223482
Gene Name: NUTM2A-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
168-182
0.035
2
XLOC_014162
hsa-miR-125a-5p
0.813
mTTBlnEmP

Gene Details
Chromosome: chr22
Transcript: TCONS_00029320
Biotype: transcript isomorph
Gene id: XLOC_014162
Gene Name: XLOC_014162
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
469-495
0.020
1
7mer
175-196
0.006
0
7mer
1456-1477
0.004
1
6mer
4641-4662
0.002
1
6mer
1645-1664
0.001
1
6mer
1171-1195
0.001
1
6mer
1189-1210
0.000
2
FLJ33581
hsa-miR-125a-5p
0.813
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000457274
Biotype: lincRNA
Gene id: ENSG00000230133
Gene Name: FLJ33581
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
97-117
0.016
0
7mer
1568-1595
0.009
0
7mer
1336-1361
0.009
1
6mer
1876-1901
0.001
Not Conserved
RP11-108M9.3
hsa-miR-125a-5p
0.813
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000619677
Biotype: pseudogene
Gene id: ENSG00000228549
Gene Name: RP11-108M9.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
744-770
0.025
0
6mer
669-695
0.009
2
KB-1552D7.2
hsa-miR-125a-5p
0.812
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000622091
Biotype: sense_intronic
Gene id: ENSG00000179577
Gene Name: KB-1552D7.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1166-1187
0.035
0
RP11-686D22.5
hsa-miR-125a-5p
0.811
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000589099
Biotype: lincRNA
Gene id: ENSG00000267711
Gene Name: RP11-686D22.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
63-83
0.035
Not Conserved
XLOC_002476
hsa-miR-125a-5p
0.811
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003490
Biotype: transcript isomorph
Gene id: XLOC_002476
Gene Name: XLOC_002476
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
236-257
0.035
1
CTC-471J1.8
hsa-miR-125a-5p
0.811
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000594362
Biotype: processed_transcript
Gene id: ENSG00000267827
Gene Name: CTC-471J1.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
134-157
0.016
1
7mer
168-190
0.014
0
6mer
151-172
0.005
2
FLJ36777
hsa-miR-125a-5p
0.811
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000501888
Biotype: lincRNA
Gene id: ENSG00000245468
Gene Name: FLJ36777
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1764-1786
0.011
1
7mer
421-443
0.010
1
7mer
1788-1812
0.008
1
6mer
1710-1727
0.005
1
XLOC_011614
hsa-miR-125a-5p
0.811
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023840
Biotype: transcript isomorph
Gene id: XLOC_011614
Gene Name: XLOC_011614
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
370-392
0.032
3
6mer
740-754
0.002
0
RP11-7F17.3
hsa-miR-125a-5p
0.810
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000555512
Biotype: lincRNA
Gene id: ENSG00000258819
Gene Name: RP11-7F17.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
130-154
0.034
1
XLOC_005501
hsa-miR-125a-5p
0.810
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012617
Biotype: transcript isomorph
Gene id: XLOC_005501
Gene Name: XLOC_005501
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1436-1461
0.022
1
6mer
1183-1199
0.007
1
6mer
751-773
0.006
1
RP11-498M15.1
hsa-miR-125a-5p
0.810
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000549710
Biotype: lincRNA
Gene id: ENSG00000257515
Gene Name: RP11-498M15.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
536-560
0.034
0
AP001055.6
hsa-miR-125a-5p
0.810
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000411694
Biotype: lincRNA
Gene id: ENSG00000225331
Gene Name: AP001055.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
484-503
0.034
1
KB-1552D7.2
hsa-miR-125a-5p
0.810
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000319051
Biotype: pseudogene
Gene id: ENSG00000179577
Gene Name: KB-1552D7.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1166-1187
0.034
0
XLOC_006073
hsa-miR-125a-5p
0.809
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00014122
Biotype: transcript isomorph
Gene id: XLOC_006073
Gene Name: XLOC_006073
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
74-98
0.021
1
6mer
1013-1034
0.006
1
6mer
507-529
0.004
1
6mer
570-588
0.003
0
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