LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-125a-5p


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Gene
miRNA
Score
DIANA Links
RP11-59H7.4
hsa-miR-125a-5p
0.821
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000619686
Biotype: lincRNA
Gene id: ENSG00000277144
Gene Name: RP11-59H7.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
104-126
0.036
1
CADM3-AS1
hsa-miR-125a-5p
0.821
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000415675
Biotype: antisense
Gene id: ENSG00000225670
Gene Name: CADM3-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
668-693
0.016
1
7mer
585-611
0.010
2
8mer
1214-1234
0.004
1
6mer
973-993
0.002
5
6mer
824-838
0.002
5
6mer
859-880
0.001
2
6mer
948-971
0.001
2
CTA-342B11.3
hsa-miR-125a-5p
0.821
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624235
Biotype: lincRNA
Gene id: ENSG00000280370
Gene Name: CTA-342B11.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
13786-13793
0.023
1
6mer
23864-23881
0.003
0
7mer
2703-2711
0.002
1
6mer
9668-9674
0.002
0
6mer
5134-5160
0.002
3
6mer
5290-5313
0.001
4
6mer
6579-6594
0.001
0
6mer
5376-5399
0.001
5
8mer+mismatch
5441-5465
0.001
0
LINC00599
hsa-miR-125a-5p
0.820
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000519461
Biotype: lincRNA
Gene id: ENSG00000253230
Gene Name: LINC00599
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2772-2799
0.022
1
7mer
2110-2123
0.009
1
7mer
2522-2540
0.003
0
6mer
1617-1636
0.001
1
RP11-169F17.1
hsa-miR-125a-5p
0.820
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000581011
Biotype: lincRNA
Gene id: ENSG00000263711
Gene Name: RP11-169F17.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
345-368
0.024
1
8mer
630-652
0.010
0
6mer
913-925
0.001
0
XLOC_011117
hsa-miR-125a-5p
0.819
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022385
Biotype: transcript isomorph
Gene id: XLOC_011117
Gene Name: XLOC_011117
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
451-475
0.012
1
7mer
4810-4837
0.011
3
7mer
2139-2144
0.008
2
6mer
490-513
0.003
0
6mer
471-496
0.002
0
6mer
2054-2078
0.001
1
ZNF888
hsa-miR-125a-5p
0.819
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000596623
Biotype: lincRNA
Gene id: ENSG00000213793
Gene Name: ZNF888
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
109-135
0.020
2
7mer
326-348
0.015
1
TMEM75
hsa-miR-125a-5p
0.819
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: NR_103558.1
Biotype: lincRNA
Gene id: NR_103558.1 (gene)
Gene Name: TMEM75
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1703-1721
0.021
1
7mer
1599-1624
0.012
1
6mer
331-355
0.003
0
KRTAP5-AS1
hsa-miR-125a-5p
0.819
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000424148
Biotype: antisense
Gene id: ENSG00000233930
Gene Name: KRTAP5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
713-740
0.015
0
8mer
1938-1956
0.007
0
8mer
692-712
0.004
1
7mer
573-599
0.003
0
6mer
490-506
0.003
0
6mer
514-540
0.002
0
6mer
808-825
0.002
1
LINC01118
hsa-miR-125a-5p
0.819
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000479311
Biotype: lincRNA
Gene id: ENSG00000222005
Gene Name: LINC01118
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Skeletal Muscle Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
292-311
0.035
0
RP11-672A2.1
hsa-miR-125a-5p
0.818
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000525328
Biotype: lincRNA
Gene id: ENSG00000254761
Gene Name: RP11-672A2.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
252-276
0.015
0
8mer
420-426
0.015
0
6mer
609-631
0.002
0
6mer
187-209
0.001
0
6mer
519-537
0.001
0
MEG3
hsa-miR-125a-5p
0.818
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000522771
Biotype: lincRNA
Gene id: ENSG00000214548
Gene Name: MEG3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
93-114
0.018
1
7mer
6729-6749
0.014
1
7mer
2784-2798
0.003
1
6mer
5675-5695
0.001
Not Conserved
XLOC_003125
hsa-miR-125a-5p
0.817
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006511
Biotype: transcript isomorph
Gene id: XLOC_003125
Gene Name: XLOC_003125
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Liver Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+wobble
304-329
0.020
0
6mer
33-51
0.012
6
6mer
119-142
0.003
2
MKLN1-AS
hsa-miR-125a-5p
0.817
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000429067
Biotype: antisense
Gene id: ENSG00000236753
Gene Name: MKLN1-AS
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2004-2028
0.035
0
RP1-137D17.1
hsa-miR-125a-5p
0.817
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000440168
Biotype: lincRNA
Gene id: ENSG00000226194
Gene Name: RP1-137D17.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2209-2235
0.034
0
6mer
1210-1232
0.001
0
RP11-231E6.1
hsa-miR-125a-5p
0.816
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000486726
Biotype: lincRNA
Gene id: ENSG00000243081
Gene Name: RP11-231E6.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1441-1452
0.027
1
6mer
1489-1514
0.008
2
XLOC_013039
hsa-miR-125a-5p
0.816
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00026989
Biotype: transcript isomorph
Gene id: XLOC_013039
Gene Name: XLOC_013039
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1015-1020
0.021
1
7mer
808-828
0.007
0
7mer
153-170
0.006
0
LL0XNC01-7P3.1
hsa-miR-125a-5p
0.815
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000602455
Biotype: lincRNA
Gene id: ENSG00000270012
Gene Name: LL0XNC01-7P3.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
631-657
0.031
2
6mer
2483-2497
0.002
1
6mer
908-930
0.002
3
AC008271.1
hsa-miR-125a-5p
0.815
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000492352
Biotype: lincRNA
Gene id: ENSG00000231031
Gene Name: AC008271.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1262-1287
0.027
1
6mer
1653-1676
0.008
6
PSMG3-AS1
hsa-miR-125a-5p
0.815
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000457484
Biotype: lincRNA
Gene id: ENSG00000230487
Gene Name: PSMG3-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3561-3575
0.016
0
7mer
3594-3605
0.008
0
7mer
1198-1219
0.004
1
6mer
3474-3498
0.004
1
6mer
2648-2674
0.002
0
6mer
2085-2105
0.001
0
6mer
2091-2116
0.000
1
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