LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-125a-5p


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Gene
miRNA
Score
DIANA Links
XLOC_004629
hsa-miR-125a-5p
0.826
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010166
Biotype: transcript isomorph
Gene id: XLOC_004629
Gene Name: XLOC_004629
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2136-2159
0.036
0
SNHG14
hsa-miR-125a-5p
0.826
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000551631
Biotype: antisense
Gene id: ENSG00000224078
Gene Name: SNHG14
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
63-88
0.036
1
RP11-288H12.4
hsa-miR-125a-5p
0.826
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000604521
Biotype: lincRNA
Gene id: ENSG00000270949
Gene Name: RP11-288H12.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2985-2990
0.022
1
7mer
1962-1984
0.010
1
6mer
1001-1017
0.004
1
LINC00560
hsa-miR-125a-5p
0.826
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000564593
Biotype: lincRNA
Gene id: ENSG00000261666
Gene Name: LINC00560
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1402-1421
0.019
0
8mer
1278-1300
0.017
1
XLOC_002996
hsa-miR-125a-5p
0.825
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006377
Biotype: transcript isomorph
Gene id: XLOC_002996
Gene Name: XLOC_002996
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+wobble
474-501
0.008
Not Conserved
7mer
218-240
0.005
0
8mer
2030-2056
0.004
Not Conserved
8mer
2833-2854
0.004
Not Conserved
8mer
1093-1114
0.004
Not Conserved
8mer
2123-2149
0.003
Not Conserved
7mer
2554-2572
0.002
Not Conserved
8mer
2877-2903
0.002
Not Conserved
6mer
1418-1445
0.001
Not Conserved
6mer
3143-3159
0.001
Not Conserved
6mer
4078-4097
0.001
Not Conserved
6mer
4452-4471
0.001
Not Conserved
6mer
5045-5065
0.001
Not Conserved
6mer
3787-3807
0.001
Not Conserved
CTB-12A17.3
hsa-miR-125a-5p
0.825
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000597609
Biotype: antisense
Gene id: ENSG00000269292
Gene Name: CTB-12A17.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
57-75
0.036
1
RP11-96D1.9
hsa-miR-125a-5p
0.825
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000575953
Biotype: sense_intronic
Gene id: ENSG00000262514
Gene Name: RP11-96D1.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
186-208
0.033
3
6mer
510-531
0.003
1
XLOC_009608
hsa-miR-125a-5p
0.825
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00020155
Biotype: transcript isomorph
Gene id: XLOC_009608
Gene Name: XLOC_009608
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
353-377
0.018
2
7mer
176-200
0.018
1
CTC-459F4.3
hsa-miR-125a-5p
0.824
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000588784
Biotype: lincRNA
Gene id: ENSG00000267575
Gene Name: CTC-459F4.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1100-1125
0.016
0
6mer
1473-1494
0.007
0
6mer
429-453
0.007
0
6mer
1000-1024
0.005
0
6mer
1948-1962
0.002
Not Conserved
SHANK3
hsa-miR-125a-5p
0.824
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000414786
Biotype: processed_transcript
Gene id: ENSG00000251322
Gene Name: SHANK3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4178-4202
0.015
11
7mer
1248-1269
0.011
10
7mer
4449-4476
0.007
11
6mer
1138-1155
0.001
0
6mer
4056-4080
0.001
1
6mer
5606-5632
0.001
3
LINC00461
hsa-miR-125a-5p
0.824
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000500197
Biotype: lincRNA
Gene id: ENSG00000245526
Gene Name: LINC00461
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3345-3369
0.021
6
7mer
2124-2143
0.011
1
6mer
3205-3232
0.004
3
LINC01132
hsa-miR-125a-5p
0.823
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000437601
Biotype: lincRNA
Gene id: ENSG00000227630
Gene Name: LINC01132
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
174-195
0.010
3
8mer
1711-1728
0.010
0
8mer
3105-3126
0.007
1
8mer
1791-1813
0.003
3
6mer
290-311
0.002
1
6mer
2966-2993
0.002
1
7mer
3110-3135
0.002
1
RP11-477N3.1
hsa-miR-125a-5p
0.823
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000606436
Biotype: lincRNA
Gene id: ENSG00000272156
Gene Name: RP11-477N3.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
508-526
0.036
1
RP3-468B3.2
hsa-miR-125a-5p
0.823
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000530000
Biotype: lincRNA
Gene id: ENSG00000233183
Gene Name: RP3-468B3.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
427-451
0.010
0
9mer
5209-5235
0.009
0
7mer
4071-4090
0.005
1
8mer
5196-5215
0.004
0
6mer
691-712
0.002
1
6mer
2076-2085
0.001
2
6mer
1240-1264
0.001
1
6mer
931-948
0.001
2
6mer
2474-2489
0.001
0
6mer
2275-2294
0.001
1
6mer
2603-2619
0.001
2
XLOC_002424
hsa-miR-125a-5p
0.823
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004518
Biotype: transcript isomorph
Gene id: XLOC_002424
Gene Name: XLOC_002424
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
93-113
0.036
0
ST7-AS1
hsa-miR-125a-5p
0.822
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000456775
Biotype: antisense
Gene id: ENSG00000227199
Gene Name: ST7-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
511-528
0.032
2
6mer
364-384
0.003
Not Conserved
6mer
1763-1782
0.001
0
AC005481.5
hsa-miR-125a-5p
0.822
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000409610
Biotype: antisense
Gene id: ENSG00000222012
Gene Name: AC005481.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
91-109
0.024
1
6mer
42-66
0.005
1
6mer
3188-3202
0.003
1
6mer
2857-2877
0.002
0
6mer
2797-2819
0.002
0
TTN-AS1
hsa-miR-125a-5p
0.821
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000604571
Biotype: antisense
Gene id: ENSG00000237298
Gene Name: TTN-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
439-463
0.036
4
TTN-AS1
hsa-miR-125a-5p
0.821
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000587568
Biotype: antisense
Gene id: ENSG00000237298
Gene Name: TTN-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
461-485
0.036
4
RP11-29G8.3
hsa-miR-125a-5p
0.821
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000570285
Biotype: processed_transcript
Gene id: ENSG00000261553
Gene Name: RP11-29G8.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
HeLa Cervix Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
296-315
0.036
2
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