LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-125a-5p


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Gene
miRNA
Score
DIANA Links
U47924.30
hsa-miR-125a-5p
0.832
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000606112
Biotype: lincRNA
Gene id: ENSG00000272201
Gene Name: U47924.30
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1299-1323
0.018
1
7mer
1194-1215
0.015
1
6mer
1259-1283
0.003
1
AC079612.1
hsa-miR-125a-5p
0.832
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000358775
Biotype: lincRNA
Gene id: ENSG00000196758
Gene Name: AC079612.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3261-3283
0.032
0
6mer
2987-3007
0.002
0
7mer
1405-1429
0.001
0
6mer
1049-1071
0.001
0
RP11-42I10.1
hsa-miR-125a-5p
0.830
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000564212
Biotype: lincRNA
Gene id: ENSG00000260086
Gene Name: RP11-42I10.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
154-167
0.037
2
RP11-478K15.6
hsa-miR-125a-5p
0.830
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000421190
Biotype: lincRNA
Gene id: ENSG00000230731
Gene Name: RP11-478K15.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1290-1310
0.021
5
7mer
688-696
0.014
2
6mer
623-628
0.002
1
PROX1-AS1
hsa-miR-125a-5p
0.830
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000433082
Biotype: antisense
Gene id: ENSG00000230461
Gene Name: PROX1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
380-401
0.028
1
6mer
972-996
0.002
4
6mer
1069-1096
0.002
1
6mer
2247-2251
0.001
0
6mer
1691-1712
0.001
3
6mer
373-395
0.001
0
6mer
3446-3469
0.001
1
LINC00200
hsa-miR-125a-5p
0.830
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000425630
Biotype: lincRNA
Gene id: ENSG00000229205
Gene Name: LINC00200
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
292-310
0.011
0
7mer
1193-1218
0.006
1
6mer
2275-2279
0.005
1
6mer
473-498
0.003
1
7mer
1275-1302
0.003
0
6mer
644-669
0.003
1
7mer
1243-1260
0.002
0
6mer
1528-1549
0.002
0
RP5-1142A6.8
hsa-miR-125a-5p
0.830
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000567588
Biotype: antisense
Gene id: ENSG00000182376
Gene Name: RP5-1142A6.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1487-1502
0.012
1
8mer
644-666
0.011
1
6mer
1356-1382
0.003
0
7mer
725-750
0.003
0
6mer
324-348
0.003
2
6mer
1565-1590
0.002
2
6mer
1705-1732
0.002
1
6mer
1045-1071
0.001
Not Conserved
RP11-684B21.1
hsa-miR-125a-5p
0.829
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000560056
Biotype: lincRNA
Gene id: ENSG00000259245
Gene Name: RP11-684B21.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
352-379
0.022
5
7mer
144-160
0.014
2
TSIX
hsa-miR-125a-5p
0.829
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000604411
Biotype: lincRNA
Gene id: ENSG00000270641
Gene Name: TSIX
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
15281-15305
0.005
Not Conserved
7mer
21955-21973
0.005
2
7mer
7577-7592
0.003
0
7mer
27832-27837
0.003
2
6mer
33797-33813
0.003
7
7mer
14923-14943
0.002
Not Conserved
7mer
24497-24503
0.002
0
6mer
4563-4586
0.002
1
6mer
33275-33297
0.002
4
6mer
13635-13651
0.002
Not Conserved
6mer
4349-4364
0.002
1
6mer
8681-8697
0.001
0
6mer
15964-15978
0.001
Not Conserved
6mer
12790-12803
0.001
Not Conserved
6mer
12296-12318
0.001
Not Conserved
6mer
33355-33364
0.001
1
6mer
13095-13115
0.001
Not Conserved
XLOC_009857
hsa-miR-125a-5p
0.829
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020542
Biotype: transcript isomorph
Gene id: XLOC_009857
Gene Name: XLOC_009857
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
129-154
0.026
1
7mer
114-132
0.010
0
RP11-219C24.10
hsa-miR-125a-5p
0.829
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000432559
Biotype: lincRNA
Gene id: ENSG00000228229
Gene Name: RP11-219C24.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
31-56
0.017
0
7mer
172-195
0.013
Not Conserved
7mer
12-37
0.006
Not Conserved
SLX1A-SULT1A3
hsa-miR-125a-5p
0.828
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: NR_037608.1
Biotype: sense
Gene id: NR_037608.1 (gene)
Gene Name: SLX1A-SULT1A3
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
20-36
0.025
0
8mer
289-309
0.007
0
7mer
1172-1196
0.003
1
6mer
262-285
0.002
1
C1orf147
hsa-miR-125a-5p
0.828
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000367119
Biotype: antisense
Gene id: ENSG00000162888
Gene Name: C1orf147
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
128-151
0.012
3
8mer
286-303
0.012
0
6mer
1456-1479
0.003
1
6mer
318-341
0.003
1
6mer
64-86
0.002
0
7mer
717-738
0.002
0
6mer
773-798
0.002
0
RP11-809O17.1
hsa-miR-125a-5p
0.828
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000520885
Biotype: antisense
Gene id: ENSG00000253210
Gene Name: RP11-809O17.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
73-99
0.036
1
RP11-352D13.5
hsa-miR-125a-5p
0.828
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000558454
Biotype: lincRNA
Gene id: ENSG00000259504
Gene Name: RP11-352D13.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
274-298
0.033
1
6mer
235-247
0.003
1
XLOC_011712
hsa-miR-125a-5p
0.827
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024385
Biotype: transcript isomorph
Gene id: XLOC_011712
Gene Name: XLOC_011712
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
281-303
0.036
1
RP11-37C7.2
hsa-miR-125a-5p
0.827
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000559899
Biotype: sense_intronic
Gene id: ENSG00000259432
Gene Name: RP11-37C7.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
96-116
0.036
1
RP11-71N10.1
hsa-miR-125a-5p
0.827
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000467198
Biotype: lincRNA
Gene id: ENSG00000239922
Gene Name: RP11-71N10.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1710-1728
0.036
6
MKLN1-AS
hsa-miR-125a-5p
0.827
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000416220
Biotype: antisense
Gene id: ENSG00000236753
Gene Name: MKLN1-AS
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
519-543
0.036
0
RP11-111I12.1
hsa-miR-125a-5p
0.827
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000445180
Biotype: lincRNA
Gene id: ENSG00000233399
Gene Name: RP11-111I12.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
811-827
0.021
0
7mer
311-327
0.008
0
7mer
1345-1366
0.007
1
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