LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-125a-5p


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Gene
miRNA
Score
DIANA Links
XLOC_007536
hsa-miR-125a-5p
0.836
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016675
Biotype: transcript isomorph
Gene id: XLOC_007536
Gene Name: XLOC_007536
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
943-968
0.031
1
6mer
183-205
0.003
0
6mer
778-782
0.003
1
TTN-AS1
hsa-miR-125a-5p
0.836
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000587944
Biotype: antisense
Gene id: ENSG00000237298
Gene Name: TTN-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
845-869
0.037
4
MIR497HG
hsa-miR-125a-5p
0.835
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000443997
Biotype: antisense
Gene id: ENSG00000267532
Gene Name: MIR497HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
531-552
0.037
6
RP11-576I22.2
hsa-miR-125a-5p
0.835
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000421020
Biotype: antisense
Gene id: ENSG00000231407
Gene Name: RP11-576I22.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
504-521
0.022
1
7mer
227-248
0.015
1
RP11-574K11.29
hsa-miR-125a-5p
0.835
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000415917
Biotype: lincRNA
Gene id: ENSG00000272140
Gene Name: RP11-574K11.29
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
641-668
0.037
1
MIR223
hsa-miR-125a-5p
0.835
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000621933
Biotype: antisense
Gene id: ENSG00000274536
Gene Name: MIR223
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
503-529
0.037
Not Conserved
RP11-431J24.2
hsa-miR-125a-5p
0.835
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000435789
Biotype: antisense
Gene id: ENSG00000238178
Gene Name: RP11-431J24.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
991-1017
0.035
1
6mer
289-313
0.002
Not Conserved
RP5-1184F4.5
hsa-miR-125a-5p
0.835
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000442179
Biotype: antisense
Gene id: ENSG00000236772
Gene Name: RP5-1184F4.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
743-767
0.031
2
7mer
952-978
0.006
3
XLOC_001362
hsa-miR-125a-5p
0.834
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00002688
Biotype: transcript isomorph
Gene id: XLOC_001362
Gene Name: XLOC_001362
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1354-1379
0.027
1
6mer
1745-1768
0.008
6
6mer
729-735
0.003
0
RP11-415C15.3
hsa-miR-125a-5p
0.834
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000513616
Biotype: lincRNA
Gene id: ENSG00000251325
Gene Name: RP11-415C15.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Lymph Node Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
482-501
0.037
1
XLOC_010023
hsa-miR-125a-5p
0.834
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020723
Biotype: transcript isomorph
Gene id: XLOC_010023
Gene Name: XLOC_010023
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
475-498
0.020
0
7mer
846-867
0.017
0
XLOC_002795
hsa-miR-125a-5p
0.834
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006199
Biotype: transcript isomorph
Gene id: XLOC_002795
Gene Name: XLOC_002795
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
183-209
0.037
2
RP1-228P16.8
hsa-miR-125a-5p
0.834
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000616571
Biotype: lincRNA
Gene id: ENSG00000276814
Gene Name: RP1-228P16.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
574-595
0.037
5
RP11-380J14.1
hsa-miR-125a-5p
0.834
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000412427
Biotype: lincRNA
Gene id: ENSG00000204362
Gene Name: RP11-380J14.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
Fibroblasts Foreskin Normal/Primary
- Kidney Normal/Primary
- Placenta Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4456-4481
0.020
2
7mer
4210-4231
0.006
0
6mer
4576-4587
0.003
2
6mer
441-460
0.003
1
7mer
506-526
0.002
1
6mer
1837-1856
0.001
2
6mer
2800-2816
0.001
1
6mer
1357-1384
0.001
1
CASK-AS1
hsa-miR-125a-5p
0.834
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000451126
Biotype: antisense
Gene id: ENSG00000233033
Gene Name: CASK-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
477-502
0.037
1
XLOC_002841
hsa-miR-125a-5p
0.834
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006248
Biotype: transcript isomorph
Gene id: XLOC_002841
Gene Name: XLOC_002841
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
416-437
0.037
1
RP11-401P9.4
hsa-miR-125a-5p
0.833
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000563424
Biotype: lincRNA
Gene id: ENSG00000261685
Gene Name: RP11-401P9.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
390-405
0.032
9
6mer
1149-1169
0.002
1
6mer
2093-2108
0.001
Not Conserved
6mer
695-716
0.001
1
6mer
1693-1719
0.001
1
6mer
1787-1812
0.000
1
RP11-700H6.2
hsa-miR-125a-5p
0.833
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000506394
Biotype: lincRNA
Gene id: ENSG00000251665
Gene Name: RP11-700H6.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
52-75
0.037
1
BGLT3
hsa-miR-125a-5p
0.832
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000564523
Biotype: sense_overlapping
Gene id: ENSG00000260629
Gene Name: BGLT3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
495-511
0.037
0
LOC100131825
hsa-miR-125a-5p
0.832
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_037870.1
Biotype: antisense
Gene id: NR_037870.1 (gene)
Gene Name: LOC100131825
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
668-693
0.016
1
7mer
585-611
0.011
2
8mer
1214-1234
0.004
1
6mer
973-993
0.002
5
6mer
824-838
0.002
5
6mer
859-880
0.001
2
6mer
948-971
0.001
2
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